YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149057886, gi...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIYSPDMSE VAGGRSSSPS TQLSAAPSLD GLPAAEEHIP DTHTEDERSP GLLGLAVPCC  60
   61 VCLEAERLRG CLNSEKICIV PILACLVSLC LCIAGLKWVF VDKIFEYDSP THLDPGGLGQ 120
  121 DPVISLDPTA APAILVSSEA YTSPVSKAQS EAGAHVTVQG DHAAVASEPS AVPTRKNRLS 180
  181 AFPPFHSTAP PFPSPARTPE VRTPKSGTQP QTTETNLQTA PKLSTSTSTT GTSHLIKCAE 240
  241 KEKTFCVNGG ECFTVKDLSN PSRYLCKCPN EFTGDRCQNY VMASFYSTST PFLSLPE

Type	Start	End	Confidence
Cytoplasmic	1	76	0.81
Transmembrane Helix	77	100	0.79
Non-Cytoplasmic	101	297	0.95