YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71733898, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIMDEPTSAI GEREAQTLFK AIRRLAARGA GIIYVSHRLS ELAQIADDYS IFRDGAFVES  60
   61 GRMADIDRAH LVRGIVGQEL QRIDHKVGRE CAAECCLNVE SLSRNGEFED ISLHVRHGEI 120
  121 LGIYGLMGSG RSEFLNCLYG LTTPDSGSVT LQGKPMPIGL PKATIRAGVS LVTEDRKDSG 180
  181 LVLSGSILSN IALSAYRQLS NWSLIDARKE HKLAEDMVRR LQIKTASLDL PVASMSGGNQ 240
  241 QKVVLAKCLS TEPVCLLCDE PTRGIDEGAK QEIYHLLDQF VRGCRSFPGS PAESCLMNAK 300
  301 TIVAPATTAT TATTAPRSRL RLSVDRFGLP LVFILLCLVM AFASEYFMTW RNWMDILRQT 360
  361 SINGILAVGM TYVILTKGID LSVGSILAFA GLCSALVATQ GYGLLAAVSA GMFAGAMLGV 420
  421 VNGFMVANLS IPPFVATLGM LSIARGMTFI LNDGSPVTDL PEEYLALGIG RVGPIGVPII 480
  481 IFAVVALIFW MVLRYTTYGR YVYAVGGNEK SARTSGIGVR KVMFSVYVVS GLLAGLAGVV 540
  541 LSARTTSALP QAGMSYELDA IAAVVIGGTS LSGGTGSIVG TLFGALLIGV INNGLNLLGV 600
  601 SSYYQQVAKG LIIVFAVLID VWRKKKR

Type	Start	End	Confidence
Cytoplasmic	1	326	0.72
Transmembrane Helix	327	348	0.92
Non-Cytoplasmic	349	355	0.71
Transmembrane Helix	356	376	0.76
Cytoplasmic	377	382	0.54
Transmembrane Helix	383	416	0.73
Non-Cytoplasmic	417	417	0.32
Transmembrane Helix	418	449	0.68
Cytoplasmic	450	471	0.69
Transmembrane Helix	472	493	0.90
Non-Cytoplasmic	494	522	0.75
Transmembrane Helix	523	543	0.91
Cytoplasmic	544	560	0.67
Transmembrane Helix	561	588	0.83
Non-Cytoplasmic	589	602	0.73
Transmembrane Helix	603	622	0.85
Cytoplasmic	623	627	0.88