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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|73999130
Protein type: Transmembrane
Type Confidence: 0.92
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPGMMSLF GEDGNIFSEG LEGLGECGYP ENPVNPMGQQ MPIDQGFASL QPSLHHPSTN  60
   61 QNQTKLTHFD HYNQYEQQKM HLMDQPNRMM SSAPGNGLAS PHSQYHGPPV PQVPHGGSGG 120
  121 SQMGVYPGMQ NERHGQSFVD SGSMWGPRAV QVPDQIRAPY QQQPQPQPPQ PTPSGPPAQG 180
  181 HPQHMQQMGS YMARGDFSMQ QHGQPQQRMS QFSPGQEGLN QGSPFIATSG PGHLSHVPQQ 240
  241 SPSMAPSLRH SVPQFHHHPP TALHGESVAH SPRFSPNPPQ QGAVRPQTLN FSSRSQTVPS 300
  301 PTMNNSGQYS RYPYSNLNQG LVNNTGMNQN LGLTNNPPMS QSVPRYPNAV GFPSNSGQGL 360
  361 MHQQPIHPSG SLNQMNTQTM HPSQPQGTYA SPPPMSPMKA MSNPAGTPPP QVRPGSAGIP 420
  421 MEVGSYPNMP HPQPSHQPPG AMGIGQRNMG PRNMQQSRPF MGMSSAPREL AGHMRPNGCP 480
  481 GVGLADPQAI QERLLPGQQH PGQQPSFQQL PTCPPMQPHP GLHHQSSPPH PHHQPWAQLH 540
  541 PSPQNTPQKV PVPQHSPSEP FLEKPVPDMT QVSGPNAQLV KSDDYLPSVE QQPQQKKKKK 600
  601 KNNHIVAEDP SKSFGKDDFP GGVDNQELNR NSLDGSQEEK KKKKRPKVKK DPKEPKEPKE 660
  661 KKEPKEPKTP KAPKIPKEPK EKKAKTATPK PKSSKKSSNK KPDSEASALK KKVNKGKTEG 720
  721 SENSDLDKTP PPSPPPEEDE DPGVQKRRSS RQVKRKRYTE DLEFKISDEE ADDADTAGRD 780
  781 SPSNTSQSEQ QESVDAEGPV VEKIMSSRSV KKQKDSGEEV EVEEFYVKYK NFSYLHCQWA 840
  841 SVEDLEKDKR IQQKIKRFKA KQGQNKFLSE IEDELFNPDY VEVDRIMDFA RSTDERGEPV 900
  901 THYLVKWCSL PYEDSTWELR QDIDQAKIEE FEKLMSREPE TERVERPPAD DWKKSESSRE 960
  961 YKNNNKLREY QLEGVNWLLF NWYNMRNCIL ADEMGLGKTI QSITFLYEIY LKGIHGPFLV1020
 1021 IAPLSTIPNW EREFRTWTEL NVVVYHGSQA SRRTIQSYEM YFKDPQGRVI KGSYKFHAII1080
 1081 TTFEMILTDC PELRNIPWRC VVIDEAHRLK NRNCKLLEGL KMMDLEHKVL LTGTPLQNTV1140
 1141 EELFSLLHFL EPSRFPSETT FMQEFGDLKT EEQVQKLQAI LKPMMLRRLK EDVEKNLAPK1200
 1201 EETIIEVELT NIQKKYYRAI LEKNFTFLSK GGGQANVPNL LNTMMELRKC CNHPYLINGA1260
 1261 EEKILEEFKE THNADSPDFQ LQAMIQAAGK LVLIDKLLPK LKAGGHRVLI FSQMVRCLDI1320
 1321 LEDYLIQRRY PYERIDGRVR GNLRQAAIDR FSKPDSDRFV FLLCTRAGGL GINLTAADTC1380
 1381 IIFDSDWNPQ NDLQAQARCH RIGQSKSVKI YRLITRNSYE REMFDKASLK LGLDKAVLQS1440
 1441 MSGRENATNG VQQLSKKEIE DLLRKGAYGA LMDEEDEGSK FCEEDIDQIL LRRTHTITIE1500
 1501 SEGKGSTFAK ASFVASGNRT DISLDDPNFW QKWAKKAELD IDALNGRNNL VIDTPRVRKQ1560
 1561 TRLYSAVKED ELMEFSDLES DSEEKPCTKP RRPQDRSQGY ARSECFRVEK NLLVYGWGRW1620
 1621 TDILSHGRYK RQLTEQDVET ICRTILVYCL NHYKGDENIK SFIWDLITPT ADGQTRALVN1680
 1681 HSGLSAPVPR GRKGKKVKAQ STHPVVQDAD WLAGCNPDAL FQEDSYKKHL KHHCNKVLLR1740
 1741 VRMLYYLRQE VIGDQADKIL EGADSSEADV WIPEPFHAEV PTDWWDKEAD KSLLIGVFKH1800
 1801 GYEKYNSMRA DPALCFLERV GMPDAKAIAA EQRGTDMLAD GGDGGEFDRE DEDPEYKPTR1860
 1861 TPFKDEIDEF ANSPPEDKEE AMDIRTTGKP SESTAELGQL YWPNTSTLTT RLRRLITAYQ1920
 1921 RSYKRQQMRQ EALMKTDRRR RRPREEVRAL EAEREAIISE KRQKWTRREE ADFYRVVSTF1980
 1981 GVIFDPMKQQ FDWNQFRAFA RLDKKSDESL EKYFSCFVAM CRRVCRMPTK PDDEPPDLSS2040
 2041 MIEPITEERA SRTLYRIELL RKIREQVLHH PQLGERLKLC QPSLDLPEWW ECGRHDRDLL2100
 2101 VGAAKHGVSR TDYHILNDPE LSFLDAHKNF AQNRGAGNMS SLGPLAVGFG QTPAILSSAH2160
 2161 VQEEKATGQS EGKGEESGSV ATQEKTEGKE DDEEVDGGEK DSKQGCEAEA GSVRSELKGM2220
 2221 EVTADTGPKS ISEKGSEEDE EEKLEDDDKS EESSQLEAGA VSRGKNFDEE SNASMSTARD2280
 2281 ETRDGFYMED GDPSVAQLLH ERTFAFSFWP KDRVMINRLD NICEAVLKGK WPVNRRQMFD2340
 2341 FQGLIPGYTP PTMDSPLQKR SFAELSMVGQ ASISGSEDLT TSPQLSKEDA LNLSVPRQRR2400
 2401 RRRRKIEIEA ERAAKRRNLM EMVAQLRESQ VVSENGQEKV VDLSKASREA ASSTSNFSSL2460
 2461 TSKFILPNVS TPVSDAFKTQ MELLQAGLSR TPTRHLLNGS LVDGEPPMKR RRGRRKNVEG2520
 2521 LDLLFMSHKR TSLSAEDAEV TKAFEEDIET PPTRNIPSPG QLDPDTRIPV INLEDGTRLV2580
 2581 GEDAPKNKDL VEWLKLHPTY TVDMPSYVPK NADVLFSSFQ KPKQKRHRCR NPNKLDINTL2640
 2641 TGEERVPVVN KRNGKKMGGA MAPPMKDLPR WLEENPEFAV APDWTEIVKQ SGFVPESMFD2700
 2701 RLLTGPVVRG EGASRRGRRP KSEIARAAAA AAAASTSGIN PLLVNSLFAG MDLTSLQNLQ2760
 2761 NLQSLQLAGL MGFPPGLATA AAAGGDTKNP AAVLPLMLPG VAGLPNVFGL GGLLNSPLSA2820
 2821 AAGNATTASG QGDPDDGTSK GEEKGNENEE ENKDSEKSTD AVSATDSANG SVGAATAPAG2880
 2881 LPSSPLAFNP FLLSTMAPGL FYPSMFLPPG LGGLTLPGFP ALAGLQNAVG SGEEKAPDKA2940
 2941 EGGAFQEEEN LEGSDAEENL DKTAESSIFE DEMAQGEELD SLDGGDELEN NENDE

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