YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73998619
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRLLFPPLK AFVGSPCLRL LVPRAAPRAQ CGCSCGIRRP LRPGQYSTIS EVALQSGRGT  60
   61 VPLPSKAAER VVGRWLLVCS GTVAGAVILG GVTRLTESGL SMVDWHLIKE MKPPTSQEEW 120
  121 ETEFQKYQQF PEFKILNHDM TLAEFKFIWY MEYSHRMWGR LVGLAYILPA VYFWRKGWLS 180
  181 RGMKGRVLAL CGLVCFQGLL GWYMVKSGLE EKPDSHDIPR VSQYRLAAHL GSALVLYCAS 240
  241 LWTALSLLLS QHKLPETRQL LWLRRCAHGT AGLVFLTALS GAFVAGLDAG LVYNSFPKMG 300
  301 ESWIPEDLFT FSPILRNVFE NPTMVQFDHR ILGITSVTAV TALYFFSRRI PLPRRTRVAA 360
  361 ATLLALAYTQ VGLGISTLLM YVPTPLAATH QSGSLALLSV ALWLMNELRR VPK

Type	Start	End	Confidence
Cytoplasmic	1	71	0.98
Transmembrane Helix	72	95	0.88
Non-Cytoplasmic	96	156	0.98
Transmembrane Helix	157	175	0.95
Cytoplasmic	176	184	0.85
Transmembrane Helix	185	205	0.92
Non-Cytoplasmic	206	225	0.96
Transmembrane Helix	226	249	0.90
Cytoplasmic	250	265	0.93
Transmembrane Helix	266	287	0.89
Non-Cytoplasmic	288	328	0.91
Transmembrane Helix	329	347	0.95
Cytoplasmic	348	357	0.88
Transmembrane Helix	358	380	0.91
Non-Cytoplasmic	381	386	0.81
Transmembrane Helix	387	406	0.93
Cytoplasmic	407	413	0.92