YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89886329, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTDVGNVLF FVGVGVVGVS GNIFNLIFSL QQQVKTRSIQ TVGLILDVIS ISNIILVLST  60
   61 LAMVVSVFLN AHIWCIKPYP LGLRFEMYLM MTCGFISFWA IAWLSLFYCI KVVNFSSEIF 120
  121 RTLKKNISTV INTAVTLSCL FSFLLFLPAF SLDLPDSADK NISETNITTC PQPTFTLQID 180
  181 INAYAAAVLL LICPIPLMIM LPTSVRMVVH LCAHTRALQK NQTQVQGSDS YLLVCKLTIS 240
  241 LVGVYLSTLF MVALYFIIKV LGAFMTYQAL VSAFTFYCGM TSVLLTASNR YLKDKLWSLF 300
  301 CCRKAKEPVS KSQTVVTQDV

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.92
Transmembrane Helix	8	28	0.96
Cytoplasmic	29	43	0.86
Transmembrane Helix	44	69	0.82
Non-Cytoplasmic	70	87	0.84
Transmembrane Helix	88	110	0.91
Cytoplasmic	111	128	0.89
Transmembrane Helix	129	149	0.94
Non-Cytoplasmic	150	182	0.94
Transmembrane Helix	183	205	0.87
Cytoplasmic	206	236	0.89
Transmembrane Helix	237	258	0.90
Non-Cytoplasmic	259	265	0.75
Transmembrane Helix	266	287	0.90
Cytoplasmic	288	320	0.96