YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EG12586
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	28	0.95
Non-Cytoplasmic	29	33	0.89
Transmembrane Helix	34	55	0.92
Cytoplasmic	56	89	0.98
Transmembrane Helix	90	111	0.92
Non-Cytoplasmic	112	119	0.76
Transmembrane Helix	120	141	0.94
Cytoplasmic	142	161	0.92
Transmembrane Helix	162	184	0.95
Non-Cytoplasmic	185	192	0.81
Transmembrane Helix	193	212	0.96
Cytoplasmic	213	222	0.75
Transmembrane Helix	223	243	0.92
Non-Cytoplasmic	244	256	0.90
Transmembrane Helix	257	278	0.93
Cytoplasmic	279	284	0.89
Transmembrane Helix	285	305	0.91
Non-Cytoplasmic	306	325	0.91
Transmembrane Helix	326	347	0.94
Cytoplasmic	348	363	0.92
Transmembrane Helix	364	387	0.88
Non-Cytoplasmic	388	426	0.87
Transmembrane Helix	427	448	0.65
Cytoplasmic	449	458	0.75
Transmembrane Helix	459	478	0.77
Non-Cytoplasmic	479	487	0.84
Transmembrane Helix	488	509	0.91
Cytoplasmic	510	529	0.94
Transmembrane Helix	530	551	0.91
Non-Cytoplasmic	552	567	0.86
Transmembrane Helix	568	589	0.92
Cytoplasmic	590	595	0.93
Transmembrane Helix	596	617	0.93
Non-Cytoplasmic	618	664	0.94
Transmembrane Helix	665	685	0.91
Cytoplasmic	686	716	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTKKIFKHI PWVILGIIGA FCLAVVALRR GEHISALWIV VASVSVYLVA YRYYSLYIAQ  60
   61 KVMKLDPTRA TPAVINNDGL NYVPTNRYVL FGHHFAAIAG AGPLVGPVLA AQMGYLPGTL 120
  121 WLLAGVVLAG AVQDFMVLFI SSRRNGASLG EMIKEEMGPV PGTIALFGCF LIMIIILAVL 180
  181 ALIVVKALAE SPWGVFTVCS TVPIALFMGI YMRFIRPGRV GEVSVIGIVL LVASIYFGGV 240
  241 IAHDPYWGPA LTFKDTTITF ALIGYAFVSA LLPVWLILAP RDYLATFLKI GVIVGLALGI 300
  301 VVLNPELKMP AMTQYIDGTG PLWKGALFPF LFITIACGAV SGFHALISSG TTPKLLANET 360
  361 DARFIGYGAM LMESFVAIMA LVAASIIEPG LYFAMNTPPA GLGITMPNLH EMGGENAPII 420
  421 MAQLKDVTAH AAATVSSWGF VISPEQILQT AKDIGEPSVL NRAGGAPTLA VGIAHVFHKV 480
  481 LPMADMGFWY HFGILFEALF ILTALDAGTR SGRFMLQDLL GNFIPFLKKT DSLVAGIIGT 540
  541 AGCVGLWGYL LYQGVVDPLG GVKSLWPLFG ISNQMLAAVA LVLGTVVLIK MKRTQYIWVT 600
  601 VVPAVWLLIC TTWALGLKLF STNPQMEGFF YMASQYKEKI ANGTDLTAQQ IANMNHIVVN 660
  661 NYTNAGLSIL FLIVVYSIIF YGFKTWLAVR NSDKRTDKET PYVPIPEGGV KISSHH