YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73988924
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	304	0.58
Transmembrane Helix	305	326	0.83
Non-Cytoplasmic	327	334	0.47
Transmembrane Helix	335	358	0.84
Cytoplasmic	359	372	0.49
Transmembrane Helix	373	407	0.78
Non-Cytoplasmic	408	498	0.85
Transmembrane Helix	499	519	0.91
Cytoplasmic	520	527	0.83
Transmembrane Helix	528	550	0.81
Non-Cytoplasmic	551	577	0.76
Transmembrane Helix	578	598	0.90
Cytoplasmic	599	609	0.79
Transmembrane Helix	610	632	0.89
Non-Cytoplasmic	633	668	0.89
Transmembrane Helix	669	690	0.90
Cytoplasmic	691	710	0.88
Transmembrane Helix	711	733	0.89
Non-Cytoplasmic	734	742	0.86
Transmembrane Helix	743	765	0.94
Cytoplasmic	766	783	0.93
Transmembrane Helix	784	806	0.91
Non-Cytoplasmic	807	822	0.92
Transmembrane Helix	823	846	0.89
Cytoplasmic	847	904	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNASPDLHPS SPNPAASGAS APAARAHRGP AGGARGAAEG AEAAEAPSAQ GDLLPRGDPP  60
   61 PGYGCEDLKS AGAGAGDTLR DEGRAARAIA GPGSRGDIVE PAACRRYRTR LPEPSPVSPR 120
  121 LGSLAARSIR RPRQTDMDQD CGAPEEMSKR PASSLGAAPG PLESPRAPRT SPEQELPAAA 180
  181 PPPRVPRSAS TGAPTFQSPD ARAREAERPG AGACTAGGAG PGDALQCRIP ALRGPEGDAA 240
  241 ASVGKGTLER NSTPAGGWVN MSQSAVVLGT DGITSVLPGS VASAAAQEDE QGDENKARGN 300
  301 WSSKLDFILS MVGYAVGLGN VWRFPYLAFQ NGGGAFLIPY LMMLALAGLP IFFLEVSLGQ 360
  361 FASQGPVSVW KAIPALQGCG IAMLIISVLI AIYYNVIICY TLFYLFASFV SVLPWGSCNN 420
  421 PWNTPECKDK TKLLLDSCVI SDHPKIQIKN STFCMTAYPN LTMVNFTSQA NKTFVSGSEE 480
  481 YFKYFVLKIS AGIEYPGEIR WPLAFCLFLA WVIVYASLAK GIKTSGKVVY FTATFPYVVL 540
  541 VILLIRGVTL PGAGAGIWYF ITPKWEKLTD ATVWKDAATQ IFFSLSAAWG GLITLSSYNK 600
  601 FHNNCYRDTL IVTCTNSATS IFAGFVIFSV IGFMANERKV NIENVADQGP GIAFVVYPEA 660
  661 LTRLPLSPFW AIIFFLMLLT LGLDTMFATI ETIVTSISDE FPKYLRTHKP VFTLGCCICF 720
  721 FIMGFPMITQ GGIYMFQLVD TYAASYALVI IAIFELVGIS YVYGLQRFCE DIEMMIGFQP 780
  781 NIFWKVCWAF VTPTILTFIL CFSFYQWEPM TYGSYRYPNW SMVLGWLMLA CSVIWIPIMF 840
  841 VIKMHLAPGR FIERLKLVCS PQPDWGPFLA QHRGERYKNM IDPLGTSSLG LKLPVKDLEL 900
  901 GTQC