YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73984085
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METTLGEPHT VASRRCPGLG CPPPRTVLAR PARSRHLCAC APAARGPRPT ARLVQAAPCA  60
   61 EEPRVGSHVS GAGRREAVGG ACAAAPGNPA LRADLPASCA LLSRQDDAEA VFRLPSSSSS 120
  121 GLLPAAAARL HLQRPAMQRE PPKKRLEKKS GKQLFDPASF GKDLLAGGVA AAVSKTAVAP 180
  181 IERVKLLLQV QASSKQISAE TQYKGMMDCL VRIPREQGFF SYWRGNLANV IRYFPTQALN 240
  241 FAFKDKYKQL FMSGVNKEKQ FWRWFLANLA SGGAAGATSL CVVYPLDFAR TRLGVDIGKG 300
  301 PEERQFKGLG DCIIKIAKSD GIVGLYQGFG VSVQGIVVYR ASYFGAYDTV KGLLPKPKET 360
  361 PFLVSFFIAQ VVTTCSGILS YPFDTVRRRM MMQSGEVERQ YKGTLDCFVK IYQHEGVNAF 420
  421 FRGAFSNILR GTGGALVLVL YDKIKEFLNI DIRGSSSGD

Type	Start	End	Confidence
Non-Cytoplasmic	1	263	0.54
Transmembrane Helix	264	284	0.71
Cytoplasmic	285	322	0.41
Transmembrane Helix	323	338	0.41
Non-Cytoplasmic	339	361	0.77
Transmembrane Helix	362	383	0.86
Cytoplasmic	384	459	0.78