YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73969645
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVRGAALAP DPASPTTMAA SPSMSVIPEG SPTAMEQPVF LMTTAAQAIS GFFVWTALLI  60
   61 TCHQIYMHLR CYSCPNEQRY IVRILFIVPI YAFDSWLSLL FFTNDQYYVY FGTVRDCYEA 120
  121 LVIYNFLSLC YEYLGGESSI MSEIRGKPIE SSCMYGTCCL WGKTYSIGFL RFCKQATLQF 180
  181 CVVKPLMAVS TVVLQAFGKY RDGDFDVSSG YLYVTIIYNI SVSLALYALF LFYFATRDLL 240
  241 SPYSPVLKFF MVKSVIFLSF WQGMLLAILE KCGAIPKIHS ARVSVGEGTV AAGYQDFIIC 300
  301 VEMFFAALAL RHAFTYKVYA DKRLDAQGRC APMKSISSSL KETMNPHDIV QDAIHNFSPA 360
  361 YQQYTQQSTL EPGPAWRGGA HSLSRSHSLS GARDNEKTLL LSSDDEF

Type	Start	End	Confidence
Non-Cytoplasmic	1	42	0.75
Transmembrane Helix	43	63	0.87
Cytoplasmic	64	79	0.85
Transmembrane Helix	80	102	0.86
Non-Cytoplasmic	103	213	0.61
Transmembrane Helix	214	235	0.92
Cytoplasmic	236	248	0.75
Transmembrane Helix	249	269	0.85
Non-Cytoplasmic	270	292	0.76
Transmembrane Helix	293	314	0.68
Cytoplasmic	315	407	0.86