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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|169781998
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQELEKEK IELKEEGAIE AAELAPQDPQ AAAAAEKVLV DETRKAGLPA YQFDPNATPE  60
   61 EKAAAAAARL PPGLKHDTKP KGMAIITDKD DGTPDQYDLP PPKSATALLN EEKTETAQGE 120
  121 NGMTEDLRWA RDRTGWAPRF HEEPTEEEKA EGTLLDHQDF LEGRLDDKFF GDWYHNAAII 180
  181 VFACLSSWII AILGGGLGWI FILMAACSTY YRTSIRRVRR NFRDDINREM AKQRLETDTE 240
  241 SLEWINSFLV KFWPIYAPVL CDTIINSVDQ VLSTSTPAML DSLRLKTFIL GSKPPRLEHV 300
  301 KTYPKTEVDT VIMDWKFSFT PNDTMDLTAR QLKNKINPKV VLEVRLGKGV VSKGLDVIVE 360
  361 DMACSGLMRV KVKLQVPFPH IERVDVCFLE RPEIDYVCKP LGGDTLGFDI NFIPGLETFI 420
  421 KEQIHNNLGP MMYSPNVFPV EIAKMLAGNP VDQAIGVVAV TLHGAHQLKN PDAFAGTPDP 480
  481 YASVSLNGRT ELGRTKTVHD TDSPRWNETI YVIITSFSDT LTIQPYDWNE FRKDKELGTA 540
  541 TFPLDRLEEQ PEHESVYLEV MASGRSRGSI HADIRFFPVL EGRTLENGEV EPAPELNTGI 600
  601 ARFTVEQAKD LDGTKSLVGQ LNPYGVLILN GKEIHITKKL KRTNNPIFQN ASKEFLVTDR 660
  661 KNARLGLVIK DDRDLTRDPI LGTYQIKFND MLKMMEKGQD WFHLHGAKTG RAKLTLQWKP 720
  721 VALGGISGSA GYIDPIGVMR FHFKSATDLR NLETMGKSDP YARVLLSGYT KARTVTFRNN 780
  781 LNPEWDEVVY VPIHSTREKL TLEVMDEESV GSDRSLGSLE INAADYVREN ENGEYLTDDE 840
  841 KQHISSDLRI GHGRVKGKLN YTVAFYPSMP VVNPDDEVEE DDLTEGANGD EEGGDQPRKS 900
  901 VDSRRKISHT KSPSTDSKAA TTNGTNGTAE SKTSLDSSRP ATIKESETMS VKSMKEVPKT 960
  961 FISLEDIAQY ESGFLVFKFH EVHLSRSNVQ VEVLMDDYMF PAYTSPKIRS KSAKVEDIGD1020
 1021 AFVRELEFSK ITLRIVDKED PKASSDEHTV AKLTGDTLST LQRILYNPTE LTLRSDSGEV1080
 1081 SKVTVSARYI PVHMKLDPSE SINNMGTLRV DVLDAAELPS ADRNGFSDPY CKFRLNDEMI1140
 1141 HKTKVQKKTL HPAWNEYFET PIKSRIAADF RVDVYDWDFG DKADYLGGTH IDLRTLDPFQ1200
 1201 SQEVSLPLDG KSGAIRLKML FKPTYVMRSR QGSSTFSGTF ATPGKIVGAP VKGVGFVGGN1260
 1261 VIKGATLGAS FLKRGITSRF HKDDSSSINE VAEDQEDASQ LEAPSVLVEG NTPPSSAQSN1320
 1321 SLQHSRTRSV ASHYSDRLGL AGKGDTGTAT ITVVSATDYP PSANVRVIVK ALGPKPKEVL1380
 1381 KSKAHKASGG TVHFDSSHET CRVHNTTADA QYQIRVVDHA TFGSDDVLGE ALFFVDDQGS1440
 1441 VAGQEKVVKV GSGAVAIRSS FSGSESTLRP GTAHSNGGDA ASDVMDSPDS KKPGRRSFLS1500
 1501 KRSVSGA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle