YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169765514
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	86	0.99
Transmembrane Helix	87	109	0.88
Non-Cytoplasmic	110	116	0.76
Transmembrane Helix	117	143	0.80
Cytoplasmic	144	162	0.70
Transmembrane Helix	163	186	0.74
Non-Cytoplasmic	187	195	0.81
Transmembrane Helix	196	214	0.96
Cytoplasmic	215	223	0.80
Transmembrane Helix	224	246	0.88
Non-Cytoplasmic	247	266	0.89
Transmembrane Helix	267	290	0.86
Cytoplasmic	291	308	0.89
Transmembrane Helix	309	330	0.93
Non-Cytoplasmic	331	362	0.90
Transmembrane Helix	363	382	0.82
Cytoplasmic	383	409	0.86
Transmembrane Helix	410	429	0.95
Non-Cytoplasmic	430	437	0.86
Transmembrane Helix	438	461	0.89
Cytoplasmic	462	482	0.93
Transmembrane Helix	483	504	0.91
Non-Cytoplasmic	505	521	0.85
Transmembrane Helix	522	543	0.90
Cytoplasmic	544	589	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKDEIEAKA EPRGAAFESP PPLYGDSEPT QAGLGRRIWD SFKRDPNAHV TGGHGSSGAD  60
   61 GKSFDIENAA QKTASSPLQR SLKGRHLQMI AIGGSIGTGL FVGSGKVLAT GGPASVLIAY 120
  121 ALIGCMLYCT VHALGEMAVL FPVAGSFAHY STRFIDPAWG FAMGWNYALQ WLVVLPLEIV 180
  181 AASITVDYWQ SDISNAAWVA IFWVLIVSIN LFGVRGYGEA EFVFSLIKVV AVIGFIILGI 240
  241 VLNCGGGPQG GYIGGKYWSD PGAFHNGFKG LCSVFVNAAF AFAGTELVGL AAAETANPRK 300
  301 SLPTAVKQVF WRICLFYIVS LTLVGLLVPW NDERLLDGSS SADAKASPFV IAIKNAGISV 360
  361 LDSIMNVVIM IAVLSVGNSS VYGSSRTLAA LAEQGQAPKF LSYIDRKGRP LWAILIASAL 420
  421 GLLSFLAASD KQEVAFEWMM AISGLSSIFT WGSVCLAHIR FRRGWKAQGH SLNELAFQSQ 480
  481 PGVIGSWIGF LFNCLVLVAQ FWVGFAPIGY ATKTAGELVE AWFSVYLAAP VVLLFYIPYK 540
  541 LWFKTPFIRA KDMDLQTGRR DLDLQYLIEQ ERAEQAEWPA WKKVYKFFC