YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83770979
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	209	0.98
Transmembrane Helix	210	230	0.89
Non-Cytoplasmic	231	250	0.91
Transmembrane Helix	251	272	0.94
Cytoplasmic	273	282	0.87
Transmembrane Helix	283	301	0.95
Non-Cytoplasmic	302	307	0.72
Transmembrane Helix	308	328	0.88
Cytoplasmic	329	340	0.80
Transmembrane Helix	341	362	0.78
Non-Cytoplasmic	363	371	0.79
Transmembrane Helix	372	393	0.87
Cytoplasmic	394	459	0.98
Transmembrane Helix	460	482	0.88
Non-Cytoplasmic	483	495	0.84
Transmembrane Helix	496	518	0.88
Cytoplasmic	519	525	0.90
Transmembrane Helix	526	547	0.95
Non-Cytoplasmic	548	554	0.79
Transmembrane Helix	555	578	0.86
Cytoplasmic	579	595	0.78
Transmembrane Helix	596	613	0.49
Non-Cytoplasmic	614	620	0.46
Transmembrane Helix	621	641	0.92
Cytoplasmic	642	767	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESTPIRHTY YIERVSGLGM DSVNTVSTCT RHFGALFLNF YSPITTGNIT STSSPRTSSS  60
   61 IPLQSLEYRF QPTPVQSVRA RESASEKGSR RSSLSAQSVE SEYSLWTDTG DLAEQLANEE 120
  121 DPLRVRLGEP LDREISSPSG SRARVKQLKR VHYPNESNLV TEQAEPEKTS IEIPRPPPRH 180
  181 ISRVERLLAV IMSPSNRQTA QMHGLVGKPL LYFTSVFVSL GVFLFGYDQG VMSGIITGWY 240
  241 FKDYFNQPSR AAIGTVVAIL EVGAFISSLL VGRIGDLIGR RRTILYGSIV FFIGGALQTF 300
  301 ANGLAMMMVG RIVAGLGVGA LSTIVPVYQS EISPPHNRGK LACIEFTGNI SGYAASVWVD 360
  361 YFCSFIDNNY SWRLPLLCQC IMGALLGLGS LVICESPRWL LDNDYDEEGM VVIANLYGQG 420
  421 DLHNDKARQE YREIKMDVLL QRQEGERSYT DMFKRYRKRV FIAMSAQALA QLNGINVISY 480
  481 YAPLVFESAG WAGRDAILMT GINAISYLAS TVPPWYLVDR WGRRPILLSG AVAMIVSLSL 540
  541 ISYFIFIDVA ATPTLTVILV MIYNAAFGAS WGPIPWLYPP EILPLSIRAK GASLSTATNW 600
  601 AFNWLVGELT PILQAVIKWR LYLVHAFFCA CSFVLVYFLY PETSGVRLED MDTLFGDATT 660
  661 AMPTPASQGE HGSLMSISSP VPSLDIRRQY SQFGPENAIP GLDIDPPTIN AGENAKVGQR 720
  721 GSRDGGGGRL EGLGGWISNM VSRHKGSSGQ RLQGTQYRRL GQDDENE