YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83767113
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAHMESLRY SNGSSLENVK PSEYEMNTKD TRSKQDMPRP QQPGPSTRHL IDRLPHMPQL  60
   61 HRPTKEELLA AANGFWSRLK VRFKWFSIRS VRPFNLDEIT ALFSWVLLGH VVWVVLGTTT 120
  121 FFSLLIIAIN TVFAQETLAG WIGNYLTKSS GVKVVFESAI VPKWRDGVIT FKNVFVSRRP 180
  181 GQGAGHVSKG SPKTAAAVAA AAALNDRPNL DLSDQRLSSV EEDTNYTQFD LAIETVNVTL 240
  241 SFTKWINGKG LLRDVEVQGI RGVVDRRYVY WSEDDFDPKS YRHEHNPGDF EIDSFKMSDV 300
  301 LVTVYQPDNF RPFSVSIFSC DLPQLRKQWL FYDFMSANMM SGSFDNSLFT IHPRQTHSFT 360
  361 GAQLDNGVGE DGRASHWKKH SRIRIDGLNI DHLNRGVQGP FSWIHEGTVD IVADIMFPTD 420
  421 NDESLTKVMA DIYDRLEATV TSTHYRDALL ENSAQPGETP SENDRRFLVT DLRLHLNNVR 480
  481 AVVPLFTRDL SYINNALIRP IVAYINSRRT FIPVNCRLVK RVGDFDGSWT IFDSGLMDDL 540
  541 SAAVYDAFAR DVVDEQARKR RFKKVGFWSL QLAAQAIFMG MAGNIA

Type	Start	End	Confidence
Cytoplasmic	1	98	0.83
Transmembrane Helix	99	117	0.71
Non-Cytoplasmic	118	118	0.31
Transmembrane Helix	119	143	0.55
Cytoplasmic	144	564	0.57
Transmembrane Helix	565	583	0.58
Non-Cytoplasmic	584	586	0.72