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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|169768782
Protein type: Transmembrane
Type Confidence: 0.83
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATNGHFASI GNSASDTTAY EHGVQVIDEN KEFKYLPMHT RVAPRCASSR IIPNLSQYLS  60
   61 LENVTPSGFN YHLISVFGSQ STGKSTLLNH LFGTHFSVMS ELERRQTTKG IWMSKNKNES 120
  121 SSMASNILVM DVEGTDGRER GEDQDFERKS ALFALATSEV LIVNIWEHQV GLYQGANMGL 180
  181 LKTVFEVNLQ LFLKDKNTTH RSLLFFVIRD YSGMTPLQNL QKTLMEDMAR LWDSISKPGG 240
  241 LENSNVHDYF DFQFYGLPHK GYQPEKFVEE TQKLSLRFCD GQRDPNLDAR KGEFSDGGVF 300
  301 LPEYHRRIPA DGFSRYAEGI WDQIVNNKDL DLPTQQELLA QFRCDEILRE VMVAFDETIV 360
  361 PFEDKQSQAA RLGEPEILGG LGAAMRSSRT KAVKAFESEA SRYHKGVYQR KRAELESKAD 420
  421 TRLKTLFQGQ LNAAHKSGIS EFSEAVTAAV KSGQKKGTGY DFAEIVNEEA KKAVDKFEEV 480
  481 ARATVVDGTS WSDYKQELAL YEKELAEVSA RLRRDEMRRL ASRVERWVQS RLGESVGLEF 540
  541 NALGSGRAGG GAPEKGDQPT EKKFWDRVWN VFVETVLDAE RRFTDRASSF DASLEEVDVG 600
  601 LWRLRRKSWG VLRAKIDEEM IEGNLLLKLR ENFEDKFRYD DAGVPRIWRP TDDIEGIYTR 660
  661 ARESTLTLIP LLSKFRLDET SAPPPLDRWI GHTPSSATSA DEEDLAPIGG VDEEEGKSLE 720
  721 EEMTIVSDAK RQELTVRFKK AADGVYVEAK RSAIGGMTQV PLYFYGLLLA LGWNEIIAVL 780
  781 RNPAYFFLLF VCAVGAYITY QLNLWGPIIK MTEAASNQAV TEGKKRLREF LESSDTGRQA 840
  841 IAMSTPGGSG RGGEEHEMSR LNQQGKSAAA DEDVDDL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle