YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73964320
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLKLQGGRD AKPVAGCQPS GEDGDPKKIK DTRPRSVPAL KGSAPRSHPR QVLRCSPREG  60
   61 RGDSAAAIQP GAPGNQQLLP DPDREVQRPA PAQTRELPSL AERSAPAQAF TWLIFPWLGA 120
  121 GRPAGTALCA YLPPPSPAGL PAAADRCFPR YYNNQPPPAP GFFGHAQPDG PAARVAVPRH 180
  181 NRSRQSERGL TETTQSWSRA VGGGEDKWLR WAPRSLDRFW SLAAAAGAPA GAARCCAGDP 240
  241 VTRQKAFSGW REVMSRFLNV LRSWLVMVSI IAIGNTLQSF RDHTFLYEKL YTGKPDLVNG 300
  301 LQARTFGIWT LLSSVIRCLC AIDIHNKTLY HITLWTFLLA LGHFLSELFV FGTAAPTIGV 360
  361 LAPLMVASFS ILGMLVGLWY LEVEPASGQK KRN

Type	Start	End	Confidence
Cytoplasmic	1	112	0.65
Transmembrane Helix	113	130	0.36
Non-Cytoplasmic	131	218	0.69
Transmembrane Helix	219	238	0.67
Cytoplasmic	239	257	0.94
Transmembrane Helix	258	277	0.93
Non-Cytoplasmic	278	300	0.90
Transmembrane Helix	301	321	0.88
Cytoplasmic	322	331	0.74
Transmembrane Helix	332	351	0.92
Non-Cytoplasmic	352	359	0.69
Transmembrane Helix	360	381	0.94
Cytoplasmic	382	393	0.94