YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73961491
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	211	0.69
Transmembrane Helix	212	236	0.87
Non-Cytoplasmic	237	260	0.65
Transmembrane Helix	261	280	0.91
Cytoplasmic	281	298	0.65
Transmembrane Helix	299	320	0.89
Non-Cytoplasmic	321	326	0.56
Transmembrane Helix	327	349	0.87
Cytoplasmic	350	388	0.69
Transmembrane Helix	389	409	0.72
Non-Cytoplasmic	410	416	0.56
Transmembrane Helix	417	439	0.72
Cytoplasmic	440	453	0.78
Transmembrane Helix	454	475	0.85
Non-Cytoplasmic	476	484	0.79
Transmembrane Helix	485	507	0.83
Cytoplasmic	508	527	0.84
Transmembrane Helix	528	546	0.53
Non-Cytoplasmic	547	564	0.51
Transmembrane Helix	565	585	0.62
Cytoplasmic	586	618	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSRKFADGE VVRGRWPGSS LYYEVEILSH DSHSQLYTVQ YKDGTELELK ENDIKPLTSF  60
   61 RQRKSGSTSS SPSRRRGSRS RSRSRSPGRP PRSSRRSASA SHQADMKEMR KEVLEVKLTP 120
  121 LVLKPFGNSI SRYNGEPEHT ERDGMLHRNA EEKFHLSEEI RSMSTQYSLR PRREEIKLKD 180
  181 IDSKEENIVP TKGSTLLKTS EVLGTQPKSL EFGGVPGVFL IMLGLPTFLF LLLLLCKEKE 240
  241 PSLLNFPPPM PALSELWDTR AFAIYFFWFS LQALFYILPI GKVVEGMPLA DGRRLKYRLN 300
  301 GFYAFLLTCV AVGAALCRGV ELHYVYHHFL PLALAAATFA MALSTYLAVR AAWAPPAALA 360
  361 PASSGNAIYD FFIGRELNPR IGTFDLKYFC ELRPGLIGWV VVNLVMLLAE MKLQHRAAPS 420
  421 LAMILVNSFQ LLYVVDALWN EEALLTTMDI THDGFGFMLA FGDLVWVPFI YSFQAFYLVN 480
  481 HPNEVSWPMA SLIIALKLCG YVIFRCANSQ KNAFRKNPTD PKLAHLKTIH TSTGKNLLVS 540
  541 GWWGFVRHPN YLGDLIMALA WSLPCGFKHV LPYFYVIYFT VLLVHREARD ERHCRKKYGL 600
  601 AWEKYCQRVP YRIFPYVY