YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573476
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.97
Transmembrane Helix	42	61	0.89
Non-Cytoplasmic	62	88	0.90
Transmembrane Helix	89	112	0.88
Cytoplasmic	113	120	0.78
Transmembrane Helix	121	140	0.93
Non-Cytoplasmic	141	144	0.87
Transmembrane Helix	145	166	0.93
Cytoplasmic	167	178	0.83
Transmembrane Helix	179	197	0.96
Non-Cytoplasmic	198	215	0.83
Transmembrane Helix	216	236	0.91
Cytoplasmic	237	308	0.98
Transmembrane Helix	309	330	0.74
Non-Cytoplasmic	331	342	0.73
Transmembrane Helix	343	365	0.81
Cytoplasmic	366	372	0.91
Transmembrane Helix	373	393	0.95
Non-Cytoplasmic	394	408	0.83
Transmembrane Helix	409	431	0.90
Cytoplasmic	432	445	0.77
Transmembrane Helix	446	468	0.86
Non-Cytoplasmic	469	474	0.76
Transmembrane Helix	475	496	0.93
Cytoplasmic	497	552	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESNNKMEKE SSLENSRNSS INEFDDSTLS NKVHTFLGYS GTRLNFIIST FAGVGFFLFG  60
   61 YDQSLIGSLL TLPNFEETFP SISGPDDGVL QGTVVSIYEI GCFAGAIATI YCGNKFGRIK 120
  121 CMLIGCIIII IGAALQASAF SVGHFIVARI VTGVGTGFMT STVPVWQSEL SRATTRGKLI 180
  181 MLMGSLITAG VATAYWVDFG FYFVSENDPK GISWRLPIIL QVIFPMMLLS VIFKVPESPR 240
  241 WLMSKKRVRE ARIVFSAIYN LPENDSEVTS QLAEIQSALE LEEAESAGFN IRELVKQGPT 300
  301 RNFQRLSLAC WSQIFQQISG INLITYYAGT IFEKYIHMSP FNARILAACN GTEYFLASLL 360
  361 GIVFIERVGR RKLLFFGAIG QALTMMALTI ATWQADKQRA ENGGGTGAGI AAAVFLFVFN 420
  421 SVFGVSYLGG TWLLPTEVSS LQLRAATAAL STSCNWLFNF MVVMITPVAF QNIGYYTYTI 480
  481 FACINILIAP MIYIFYPETS GRTLEELDII FSKTPIWKPW EVVAIEKETP KRDFTKDVEK 540
  541 PFTEHIDHVE SD