YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88658640, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.25
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSTFSNIIS LLNILSVLVR YNILPYTYLF AKRSIRKKSR GEKIAMAMQK LGPIFIKFGQ  60
   61 SISSRTDIIG EEIASHLLCL CDKLPAFPYV DVVKIVEEDF KCKINEVFCE FEQNPIAAAS 120
  121 IAQVHKAKDI NGNVRAVKVL RPRIEKIFER DIKLMFWLAR VAQNFQSLQR FQLLQLVQTF 180
  181 HEICKMEIDL RFEAANAEEL RSNIQSDKGC YVPEVDWTRT TRRVLTLEWI DAVPIYNVYK 240
  241 SENCKALVEN LIFCFCNQVY RDRFFHADMH PGNLMVDAKG RVVIIDFGIV GRLDKATCMY 300
  301 VTEILVGFLK RDYQYVADIH YRAGYVDAKY SNFVTACCAI GEPIVGKNTE NISISALLTQ 360
  361 LFKVTADFNM KLQPQLFLLQ KTTVLIEGVC RQLCPEVNMW KIAELWMEKY AIEKNKYIQK 420
  421 LKRSYLCQAI HDVPLFMKKV DKSLDLINNY QELSKAKTSI SRDVIWALIV LGLIIKLIIG 480
  481

Type	Start	End	Confidence
Non-Cytoplasmic	1	463	0.60
Transmembrane Helix	464	479	0.51
Cytoplasmic	480	480	0.25