YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88599928, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEGDFYRKY NYTLAMILGV AGAISMAPFH MFIALLIAFS GFYIVLSQVK NTRQAFFCGW  60
   61 WFGFGYFTAS SYWVNVPLII QSKIFWPLIP LTLILSASLS LLFAAAAAIS YTLNYKKLFG 120
  121 LITFSLSFTI ASMLLGYIVP WNLFAYSWSF SIEMLQTASL IGTYGMEFLA IFCSTAAGVS 180
  181 IRDKSTLPCI TALLILVSMF IYGNDRLSNN QEQKYNQKIA IRIVQGNTES HWDGNEEQEY 240
  241 DRFQTYLRLT SKYGLNSRTH VVWGENSFPF LTDTNSRSVQ NYLKFIIPGF LIAGGTRFEN 300
  301 NKFHNTLFVI NDNGQIIDFY DKLHLVPFGE FIPSILKNLI PKSIANRLNY SPGTNKEKSI 360
  361 SLNNQSPFIP LICYESIFSN EVTSRCTKGQ WIINITNDGW FGISSQPYQH LEINRVRSIE 420
  421 NGLPTIRAAN NGISAVIDSY GRIINSLPIM TEGIIDSYLP YHISEGTIYS KHLNKFITIQ 480
  481 FAIPIMLILV LLRFILSKFT S

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.73
Transmembrane Helix	14	46	0.78
Cytoplasmic	47	55	0.82
Transmembrane Helix	56	76	0.90
Non-Cytoplasmic	77	87	0.73
Transmembrane Helix	88	111	0.88
Cytoplasmic	112	117	0.84
Transmembrane Helix	118	139	0.92
Non-Cytoplasmic	140	156	0.78
Transmembrane Helix	157	179	0.85
Cytoplasmic	180	185	0.80
Transmembrane Helix	186	203	0.91
Non-Cytoplasmic	204	475	0.90
Transmembrane Helix	476	496	0.90
Cytoplasmic	497	501	0.78