YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88599592, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.64
Transmembrane Helix	5	23	0.64
Cytoplasmic	24	29	0.76
Transmembrane Helix	30	50	0.90
Non-Cytoplasmic	51	72	0.84
Transmembrane Helix	73	95	0.90
Cytoplasmic	96	101	0.88
Transmembrane Helix	102	121	0.93
Non-Cytoplasmic	122	127	0.69
Transmembrane Helix	128	148	0.92
Cytoplasmic	149	157	0.90
Transmembrane Helix	158	179	0.95
Non-Cytoplasmic	180	203	0.93
Transmembrane Helix	204	225	0.90
Cytoplasmic	226	234	0.75
Transmembrane Helix	235	254	0.92
Non-Cytoplasmic	255	265	0.83
Transmembrane Helix	266	289	0.87
Cytoplasmic	290	295	0.91
Transmembrane Helix	296	315	0.93
Non-Cytoplasmic	316	326	0.69
Transmembrane Helix	327	346	0.95
Cytoplasmic	347	365	0.92
Transmembrane Helix	366	387	0.92
Non-Cytoplasmic	388	401	0.76
Transmembrane Helix	402	422	0.93
Cytoplasmic	423	443	0.91
Transmembrane Helix	444	464	0.96
Non-Cytoplasmic	465	483	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFLMVLLPI LGSCLLAVSN FKASSLSIRV ISLLCAGTSF FINIIVAVKF DYLYKGFQFI  60
   61 HNLAPGFVVG IDGLSLPLLL LTTFLFLLSV VFALYNMQSN NLRIFLALLL LLEGLTVGVF 120
  121 VSLDIVMFYI FFESVLIPMF FIIGMWGHED RIYATFKLFL YTLSGSLLFL IAILYIYFFS 180
  181 GKISDIGQLT YILSNYLNLK AQKWVWIAFF ISFAIKIPVI PFHTWLPDAH VQAPTVGSVL 240
  241 LAGILIKVGT YALLRFSLPM LPEASMYFSN FVMILSIIGV IYASLISFVQ TNIKKLIAYS 300
  301 SIAHMGFVTA GIFSFNEYGI SGAVFQMISH GLVSAALFIC VGILYNRTHT LEIVRYSGLA 360
  361 KTMPKFSIMF IFFSMASIAL PGTSGFIGEF LSILGIFHYS KLFSIFITIG VILGALYMLF 420
  421 LCKRIIWSVQ NCDLINCNLN KNELFILVIL AAFILLFGLY PYYILLKCLT PFIEQLSLRN 480
  481 FVL