YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88599509, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.90
Transmembrane Helix	7	25	0.94
Cytoplasmic	26	50	0.89
Transmembrane Helix	51	75	0.87
Non-Cytoplasmic	76	82	0.84
Transmembrane Helix	83	103	0.94
Cytoplasmic	104	133	0.95
Transmembrane Helix	134	155	0.91
Non-Cytoplasmic	156	168	0.82
Transmembrane Helix	169	188	0.92
Cytoplasmic	189	193	0.83
Transmembrane Helix	194	215	0.88
Non-Cytoplasmic	216	240	0.81
Transmembrane Helix	241	264	0.63
Cytoplasmic	265	292	0.85
Transmembrane Helix	293	315	0.89
Non-Cytoplasmic	316	340	0.91
Transmembrane Helix	341	363	0.92
Cytoplasmic	364	382	0.86
Transmembrane Helix	383	402	0.88
Non-Cytoplasmic	403	407	0.72
Transmembrane Helix	408	426	0.94
Cytoplasmic	427	434	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILNLVLSF PAVFLLLFTG IYLSIKSKFL QITKLPSAIS LITMKKYRDK SFSIGALCTI  60
   61 IGGNLGVGNI SGTAVALKSG GPGFALWMII IVTLCSIIKY VTCYLSIETR VKVNKQYIGG 120
  121 PAIYFKNAFK SKKAVIVFTI LMLICSIAIG NFVQVNSLSI PMELINKPPI IAGLFMCAMF 180
  181 FAVTILRLEI ITALISRLVP GMAIAYIILA SFVLYKFNDN IIPSIKLMFA NFLTFDSFKS 240
  241 GMIGAFILET FHIIQVGTFR GIFATDIGLG LEGMVHSSIN SNSKNFNTHQ SMISLISPFI 300
  301 VVIVTLVTTL VILVTNAWSG PLESTNMCIA AFKSAFDSEY INYVIILIMF CFSFTTVFTW 360
  361 FVCAKSTLYC LTDGKDSLLI KMWKILYTII IPIGALGKVQ LLWDIADISI SLILISNTIA 420
  421 ILILLPKYKN IFKV