YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88599341, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.72
Transmembrane Helix	5	23	0.69
Cytoplasmic	24	30	0.82
Transmembrane Helix	31	54	0.89
Non-Cytoplasmic	55	75	0.92
Transmembrane Helix	76	98	0.92
Cytoplasmic	99	108	0.84
Transmembrane Helix	109	128	0.94
Non-Cytoplasmic	129	134	0.77
Transmembrane Helix	135	153	0.89
Cytoplasmic	154	164	0.71
Transmembrane Helix	165	187	0.91
Non-Cytoplasmic	188	208	0.83
Transmembrane Helix	209	228	0.93
Cytoplasmic	229	239	0.72
Transmembrane Helix	240	262	0.88
Non-Cytoplasmic	263	277	0.79
Transmembrane Helix	278	301	0.86
Cytoplasmic	302	308	0.80
Transmembrane Helix	309	333	0.79
Non-Cytoplasmic	334	341	0.57
Transmembrane Helix	342	361	0.81
Cytoplasmic	362	377	0.85
Transmembrane Helix	378	399	0.91
Non-Cytoplasmic	400	412	0.78
Transmembrane Helix	413	434	0.94
Cytoplasmic	435	454	0.86
Transmembrane Helix	455	476	0.91
Non-Cytoplasmic	477	491	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISSLPVLQV VIPLLSAIGC ALLKDARLVK IISAIVVLIS SAIAVVLFFQ VYHGGVIKYS  60
   61 IGGWIVPYGI ELKVNVFNSM MLVLVGFVAM MSIVYGIYPN TKEINVRTIP SFYSVFLLCF 120
  121 SGFLGILVSN DVFNIYVFLE ISSISSYILV AMGNNRNALI AAFDYLVIGT IGATFYLIGV 180
  181 GFLYAITGTL NVGNLFLIVQ DKSLTTNRAI QVGLLFIMLG LFIKAALFPF HKWLIQAYNY 240
  241 APTFISVFFS GVSTKVMIYL IIKVIYDVFK AELVLLTLPF NIVFMSFAAL SVISASILAM 300
  301 LSSNMKRIFA YSSVAHLGYI IFAVGLNTYY GLVAAVTYII NHSLVKSALF MVMGSISYNC 360
  361 GSLELKDCTN IWKNMPKIAL PFVILCISLI GMPITSGFIS KWYVFDAAIK TNFWLGVIVL 420
  421 LIGSGLSVVY VWNIIEATCF KPSDKQVKKL FEVPNVMVLC IWVMAISSII LGLYPVPLMM 480
  481 ISNKIAESLL Y