YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88599112, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.87
Transmembrane Helix	26	48	0.88
Non-Cytoplasmic	49	76	0.89
Transmembrane Helix	77	97	0.90
Cytoplasmic	98	104	0.87
Transmembrane Helix	105	126	0.89
Non-Cytoplasmic	127	132	0.83
Transmembrane Helix	133	152	0.95
Cytoplasmic	153	169	0.85
Transmembrane Helix	170	188	0.92
Non-Cytoplasmic	189	213	0.83
Transmembrane Helix	214	233	0.86
Cytoplasmic	234	251	0.77
Transmembrane Helix	252	271	0.92
Non-Cytoplasmic	272	279	0.75
Transmembrane Helix	280	302	0.90
Cytoplasmic	303	309	0.82
Transmembrane Helix	310	334	0.81
Non-Cytoplasmic	335	339	0.62
Transmembrane Helix	340	357	0.82
Cytoplasmic	358	374	0.76
Transmembrane Helix	375	396	0.91
Non-Cytoplasmic	397	411	0.76
Transmembrane Helix	412	433	0.92
Cytoplasmic	434	451	0.81
Transmembrane Helix	452	473	0.90
Non-Cytoplasmic	474	496	0.81
Transmembrane Helix	497	520	0.83
Cytoplasmic	521	594	0.63
Transmembrane Helix	595	616	0.94
Non-Cytoplasmic	617	621	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKVELLCVF LPLMGSIFAS MMNNRLMSQL VATSLVVCAS LLSWYLFFNF KDSYVITLFP  60
   61 WIELYKLKVS WSLYIDSLSM IMLIIVNTVS AVVHIYSMGY MSHDVGVSRF LSYVSLFTFF 120
  121 MLILITSDNF AQLFLGWEGV GLCSYLLIGF WFEKASATKA AMKAFIMNRI GDFFFILGIV 180
  181 AVFWVFGSLE FNKIFNMLDS IYVEGVVNFF GYPIPYLDMI CLLLFIGCMG KSAQIGLHTW 240
  241 LPDAMEGPTP ASALIHAATM VTAGVFLVAR CSPLFELSVM ARNVILIVGA FTCLFAATVA 300
  301 IVQSDVKKII AYSTCSQLGY MFIACGLSAY SVAIFHLMTH AFFKALLFLC AGNIIHATHE 360
  361 QDIHKVNASW RQIPFTYVLT WIGSLALAGI FPFAGFYSKD LIIESSYHVS KIAFIICNLV 420
  421 AFLTAFYSWR LIILVFHKVR STSLSIHESG KVMLVPLLIL AIGSIFSGMW GQNLLLINDV 480
  481 AFWKGSIKIH EHVEVGLFVK LLPLFLSILG IVCAYLKYFY NCFGNFYCNR LFKFLYNKWY 540
  541 FDELYNLIFI IPVRYIASFF SKVVDKKIID YFGLGGITKI VNCCSKGSVK IQTGFIFDYA 600
  601 FIMLLGLISI IMWLIYNNIR F