YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88657651, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHIRKKLGKL LKYRHIASRI SLKNRKDRIL SILSMTALVS SLGILFIILG SIVNNGYNAL  60
   61 TTTKILLSIT INNDTIEQQD KLTLRNNLIY FIHQSLEELF SNVIDLSNPD NRKIIYNIIN 120
  121 DTAHHNLADF LLKNPKSTKF NIWFQSSTTF NKAIKNKNIN HAIYQKVIAK LQNENRIKVS 180
  181 FNDALFTKYN SRSPENTGIL GSLIGSMFTI IICLTFALPI GITSGICLSE LIPKNKISSI 240
  241 IEISITNLAS VPSIIFGILG LAIYINIFDI PRSSALIGGM TLSLMMLPNL VTSTKQAFAA 300
  301 VPPSVKDAAF SLGASNMQVI LHHSFPIALP SIMQGAILSI ARILGESSPL IMIGMVAFIV 360
  361 DIPKDFLDPT TVLPVQIYMW ASNPHIEFIQ LAAIAIVALL LMLLILNLIV TFIRKKFDHF 420
  421 IF

Type	Start	End	Confidence
Cytoplasmic	1	28	0.80
Transmembrane Helix	29	50	0.77
Non-Cytoplasmic	51	202	0.94
Transmembrane Helix	203	228	0.84
Cytoplasmic	229	242	0.86
Transmembrane Helix	243	265	0.90
Non-Cytoplasmic	266	273	0.70
Transmembrane Helix	274	292	0.79
Cytoplasmic	293	324	0.70
Transmembrane Helix	325	359	0.58
Non-Cytoplasmic	360	387	0.88
Transmembrane Helix	388	411	0.92
Cytoplasmic	412	422	0.91