YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88657624, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.63
Transmembrane Helix	7	28	0.92
Cytoplasmic	29	32	0.59
Transmembrane Helix	33	55	0.86
Non-Cytoplasmic	56	68	0.60
Transmembrane Helix	69	90	0.89
Cytoplasmic	91	95	0.58
Transmembrane Helix	96	117	0.84
Non-Cytoplasmic	118	120	0.50
Transmembrane Helix	121	140	0.60
Cytoplasmic	141	153	0.77
Transmembrane Helix	154	175	0.92
Non-Cytoplasmic	176	192	0.90
Transmembrane Helix	193	213	0.93
Cytoplasmic	214	230	0.73
Transmembrane Helix	231	252	0.83
Non-Cytoplasmic	253	263	0.89
Transmembrane Helix	264	284	0.93
Cytoplasmic	285	291	0.90
Transmembrane Helix	292	312	0.91
Non-Cytoplasmic	313	317	0.76
Transmembrane Helix	318	338	0.92
Cytoplasmic	339	358	0.87
Transmembrane Helix	359	379	0.94
Non-Cytoplasmic	380	394	0.87
Transmembrane Helix	395	416	0.92
Cytoplasmic	417	437	0.91
Transmembrane Helix	438	457	0.95
Non-Cytoplasmic	458	469	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYWNNFVYII PEIFLVSSSL IFLLLGIVLN KKVIHVFSLV SLLVTIGIVI INLDVEPKLI  60
   61 FDGLLKSSLY ISIAKIIILF SSSSVLFMML ASGREYCYEF SIMILLAVFG LITLISANNL 120
  121 LSFYLSFEIQ SVTLYALTCF DKNAIRSSES GIKYFVLSAL SSCIMLYGIS MLYGYTTQVD 180
  181 FYELYNFFSY SEYIPLGAVL GVVLVLISMF FKLSAAPFHM WVPDVYQGTS TVMTAFFSIV 240
  241 PKSTFVFLLI RILNEVLPSL SKDWQHIVIC VSILSIFVSA FGAMRQNNLK RLFSYAAVGH 300
  301 MGYMLISLAM NTVASNIATI MYLLLYIVMN IGLFSILIQY RDDDCNLLNL KGLHNRSPVI 360
  361 AFCIAVIMLS MAGIPPLAGF YAKYDVLLSL VENGFIKVAI AFVIVSVISC YYYLRIIKVM 420
  421 YFDFSDTSNN ISLADRNLSF ILLFTVLINC IFFVFVGDVR RLIGYFFTF