YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88608767, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.77
Transmembrane Helix	7	27	0.94
Cytoplasmic	28	34	0.66
Transmembrane Helix	35	55	0.93
Non-Cytoplasmic	56	86	0.76
Transmembrane Helix	87	109	0.87
Cytoplasmic	110	118	0.88
Transmembrane Helix	119	137	0.94
Non-Cytoplasmic	138	142	0.80
Transmembrane Helix	143	161	0.96
Cytoplasmic	162	173	0.91
Transmembrane Helix	174	196	0.87
Non-Cytoplasmic	197	214	0.88
Transmembrane Helix	215	234	0.92
Cytoplasmic	235	254	0.83
Transmembrane Helix	255	275	0.92
Non-Cytoplasmic	276	286	0.78
Transmembrane Helix	287	306	0.96
Cytoplasmic	307	315	0.82
Transmembrane Helix	316	338	0.87
Non-Cytoplasmic	339	344	0.74
Transmembrane Helix	345	364	0.92
Cytoplasmic	365	377	0.95
Transmembrane Helix	378	401	0.90
Non-Cytoplasmic	402	415	0.91
Transmembrane Helix	416	438	0.89
Cytoplasmic	439	455	0.88
Transmembrane Helix	456	477	0.92
Non-Cytoplasmic	478	500	0.90
Transmembrane Helix	501	521	0.95
Cytoplasmic	522	530	0.83
Transmembrane Helix	531	563	0.77
Non-Cytoplasmic	564	600	0.66
Transmembrane Helix	601	621	0.70
Cytoplasmic	622	628	0.65
Transmembrane Helix	629	653	0.88
Non-Cytoplasmic	654	655	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNILRMLSY SIVFLPLLSC LLCCFFIRCR ESVCLQLLSS FLIGLAAISS WSLFFTLEDG  60
   61 EAFLLPLFEW ISVGSLQALF RVNIDKLTVL MFVVVNTVSF VVHCYSIAYM KNDPCKSRFF 120
  121 AYLSLFTFAM LVLVSAGDLL QLFLGWEGVG VCSYLLIGFW FRKESANVAS MKAFLVNRVG 180
  181 DFCFLIGIFS VYKIFGTLEL KGIISDVGFH SGETILGFDS LTFICLMLFI GCMSKSAQLG 240
  241 LHTWLPDAME GPTPVSALIH AATMVTAGVF LLARLSPLFE CTELVRHIIM WVGVSTAAFG 300
  301 SVVALCQDDI KRIIAYSTCS QLGYMFAACG ASAYGLAIFH LSTHAFFKAL LFLCAGNVIH 360
  361 SVGGEQDVHK MGALRNKIFS TYCMMIIGSL ALCGIFPFAG FYSKDLIISS LSHAEIPFIL 420
  421 LILTAFCTSV YSCRLLMLVF FGEQNFSLKK FHSPPVGMVL PLAPLVLLSL ISGYLGVKLL 480
  481 VNSSFWVQTG LVFRQVTEMH GLVHFLPLIF ALAGFFVVFV LEGRRISLPR IFVCLSLFTL 540
  541 LSFLLNFYLG VVSFIFSIGL ILVNRSGVIL NLFKRVLSCG FYFDKIYRVL FVGPLTHCSR 600
  601 FFWKVIDIGC INLVPALLAR LSQKLSSGVL ALQTGLLCHT VLFFFLGILF LFWVM