YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88600286, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNINYLRLKL NTRSFINKFF SFVCVFCAFL PVVFLFVLLF STFSGAYKAL QQTKFAVDLE  60
   61 KVGIASGDLR YEIREKLISY LKDQLPWEED PFIIMNFFSN YAVDEVLGAL NVGEKKVWAT 120
  121 ISGEADTVHK YRRSGSPGMK RVVQYFSERG LLKKALNYKL FTNPDSRDSS QAGIVGALIG 180
  181 SLYTVFVSLL VSFFIGVLTA LWLGEYSSRS SITRVLEVSI NNLSSTPPIV FGILGLTFYI 240
  241 NFLGLPRSSS LVGGLTLAFI MFPILVTSSL HAIRSVPDNI KQAAFALGAS KVQVILHHVL 300
  301 PLSMPGIMTG TILGIARILG ESAPLLMIGM VAFVGSIPES IREPANVFAV QIYIWATSPD 360
  361 ISTNEKTSIM VLVLLLLLLA LNCVVHFIKK VFHYDFH

Type	Start	End	Confidence
Cytoplasmic	1	18	0.79
Transmembrane Helix	19	40	0.86
Non-Cytoplasmic	41	178	0.89
Transmembrane Helix	179	203	0.89
Cytoplasmic	204	222	0.76
Transmembrane Helix	223	243	0.89
Non-Cytoplasmic	244	250	0.75
Transmembrane Helix	251	273	0.91
Cytoplasmic	274	293	0.77
Transmembrane Helix	294	319	0.74
Non-Cytoplasmic	320	322	0.48
Transmembrane Helix	323	341	0.53
Cytoplasmic	342	366	0.44
Transmembrane Helix	367	388	0.90
Non-Cytoplasmic	389	397	0.44