YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88600284, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVSEKYLSV LLGVCMTLGF APFHLTLILV FALALVYRQL RLSSSMQETF LFSVHFGSAF  60
   61 FLTSLYWIAF ALATDIQNLW WLIIPVPIVL SLFLSLYFAC AFTLFKAIAI QNPLSFSIII 120
  121 TGSEYLREVC FGGFPWNLIG YSWNHLEILQ LTSLFGIFGL TAFTTFISGS VGELLLKDSK 180
  181 KARIYFVCSV ILFISVFCFG LRRLSLYPTQ YSSKVVRIVQ ANISHQQVWT PEFQKMVLKK 240
  241 YIQLSRSRPS AKITYFVWPE SSLPFLFSGP KTDVTLHVSQ ALGKPLVAAG TRRDNNALFN 300
  301 SIFVLRDGII AEYYDKVKLI PFGEYIPLEN IIPVKKIVNG MSSFTYGDDS TKVLDSIKAA 360
  361 PILCYESIFS TFVGRKKPAE WIVNLTNDSW LGNSTARYQH LQMARVRAIE YGLPVVRSTT 420
  421 TGISAVIDPY GRILEKIDYS SEGVLDIAIP EKHKKKTFYS SLIQNINKLR SW

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.64
Transmembrane Helix	10	37	0.78
Cytoplasmic	38	49	0.58
Transmembrane Helix	50	71	0.92
Non-Cytoplasmic	72	78	0.57
Transmembrane Helix	79	105	0.83
Cytoplasmic	106	113	0.46
Transmembrane Helix	114	131	0.49
Non-Cytoplasmic	132	147	0.72
Transmembrane Helix	148	172	0.83
Cytoplasmic	173	183	0.79
Transmembrane Helix	184	201	0.98
Non-Cytoplasmic	202	472	0.98