YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88607720, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.46
Transmembrane Helix	6	22	0.67
Cytoplasmic	23	27	0.58
Transmembrane Helix	28	49	0.79
Non-Cytoplasmic	50	78	0.74
Transmembrane Helix	79	99	0.92
Cytoplasmic	100	107	0.86
Transmembrane Helix	108	127	0.93
Non-Cytoplasmic	128	134	0.75
Transmembrane Helix	135	154	0.96
Cytoplasmic	155	165	0.94
Transmembrane Helix	166	188	0.87
Non-Cytoplasmic	189	219	0.90
Transmembrane Helix	220	242	0.85
Cytoplasmic	243	252	0.83
Transmembrane Helix	253	272	0.93
Non-Cytoplasmic	273	280	0.79
Transmembrane Helix	281	303	0.90
Cytoplasmic	304	310	0.86
Transmembrane Helix	311	335	0.82
Non-Cytoplasmic	336	340	0.64
Transmembrane Helix	341	358	0.93
Cytoplasmic	359	377	0.88
Transmembrane Helix	378	399	0.92
Non-Cytoplasmic	400	411	0.87
Transmembrane Helix	412	435	0.88
Cytoplasmic	436	454	0.95
Transmembrane Helix	455	478	0.90
Non-Cytoplasmic	479	501	0.92
Transmembrane Helix	502	522	0.92
Cytoplasmic	523	599	0.82
Transmembrane Helix	600	622	0.92
Non-Cytoplasmic	623	625	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSIEFLCVV LPLLGALLGY LLKHGRFVSH VVACSFIGKS AILSWYLFLA TKQSYAVDLL  60
   61 SWLEVGGVSV RWSIYIDKLT TVMMIVVTTV SFIVHLYSVG YMHKDKGAVR FLAYLSMFTF 120
  121 FMMALVTSGN FMQLFFGWEG VGLCSYLLIG FWFGKDSATK AAMKAFVVNR VGDLFFLCGI 180
  181 LVVFYSFHTL NFDEIFAKIA DGWDLGVVDV WGYQVPLKDL AVILLFVGCM GKSAQLGLHV 240
  241 WLPDAMEGPT PASALIHAAT MVTAGVFLIA RSSPIVELSP IGQEVILVVG LATCLFAAVV 300
  301 AILQEDIKKI VAYSTCSQLG YMFVACGTSS YHLAIFHLLT HAFFKSLLFL LAGNVIHSNN 360
  361 GEQRIAYMSK NCWRDIPFTY ALMWIGSLAL MGVFPLAGYY SKDLIIESSY GHVAGFVITN 420
  421 LVACLTSAYS CRLMIRVFHN SHSERIPSIH ESSKIMLLPL LVLMVGAVFS GMVFKNVLGI 480
  481 TEGAFWSNSL SVHAHEGEIS RIIELIPTGM VALGVLLCYL FCRYKSLIYY IPHALKNVVK 540
  541 NKFYFDEIYE GVFVIPMQKI SELLWRAVDQ KVIDYFILGG ITKAVVMSAQ HGVRIQSGRV 600
  601 VGYALVMLLG VVSAALLVVY GFKTQ