YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88607670, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.81
Transmembrane Helix	27	45	0.87
Cytoplasmic	46	53	0.71
Transmembrane Helix	54	71	0.91
Non-Cytoplasmic	72	76	0.61
Transmembrane Helix	77	96	0.89
Cytoplasmic	97	105	0.70
Transmembrane Helix	106	127	0.89
Non-Cytoplasmic	128	135	0.75
Transmembrane Helix	136	156	0.93
Cytoplasmic	157	163	0.74
Transmembrane Helix	164	183	0.91
Non-Cytoplasmic	184	190	0.79
Transmembrane Helix	191	209	0.97
Cytoplasmic	210	215	0.91
Transmembrane Helix	216	237	0.88
Non-Cytoplasmic	238	241	0.76
Transmembrane Helix	242	264	0.86
Cytoplasmic	265	280	0.88
Transmembrane Helix	281	304	0.84
Non-Cytoplasmic	305	328	0.85
Transmembrane Helix	329	346	0.95
Cytoplasmic	347	366	0.84
Transmembrane Helix	367	387	0.91
Non-Cytoplasmic	388	395	0.81
Transmembrane Helix	396	418	0.91
Cytoplasmic	419	455	0.95
Transmembrane Helix	456	476	0.79
Non-Cytoplasmic	477	483	0.66
Transmembrane Helix	484	505	0.94
Cytoplasmic	506	506	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLYNFTFS NIFQALGGEN VFSLDKVSAI PLIMSFLASM FCIVCRCRVG FKELLCSLLY  60
   61 CISSIAVLLF SNLTLVTIGF EIMALTAVCI VAFGAYKGRD FAFLHYACLH FISGFLLLVG 120
  121 ASQHAHLGVL EGIPRWFFML GLIINTAAFP AASWLVRAYP VSSSFGMLVL SLFTTKVALY 180
  181 VLLKFFSGES IILYFGIFTS IYAAIFAFLE QNVRRLMAYM FVGQAGLLMM AIGCPGIPSD 240
  241 LIIVQLSFSV LYQLLLGMFA DSVVKRSGHV DINRMAGCFK LASMEAMGCI VALLNLGGFP 300
  301 WTAGFVTKGL MLHMNLQSFD YMLLKYMQPM LGWLLFASNG MKLFWLACLK PCSTTPEYAP 360
  361 SPFSSKLSII MLSLIITVSG VLYGEGLLFS EHKFVYTFGA VATKLIWLGG VVLFFILFRR 420
  421 QFLGRYESAI GDSWVYRQFF IMAEKFAHAA SRMREVLGGL FAGGAFSIET SGSTVLSARS 480
  481 PSGVVSSTLL LVMLSICIIV LVWAYV