YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88598419, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPRRSVFAV LDMGSTKVVC LAVKVNDEGV PEVIGVGYKP SEGINGGAIV NKQSAGCSVL  60
   61 SSIDLAEQVS AQTISQVYVT VSGCGVKSSN ISNEVLSNVH EISERDIRRI MLQTYEKFSG 120
  121 EDIAIHNVPM AYHLDNLSNI TELEGLYGSK LRADVHAVTV SKLALVNIEQ CITSNNLMMG 180
  181 GCVAESYASG LACMTDDERE LGTLVIDMGS NYTSMGFFYK GKYEHADCIP FGGHHITRDV 240
  241 SYGLCVSLKD AESIKVTHGS TMLFSSDDDY PIEICDVDGE LKCVTRADIA SIIRPRVEEI 300
  301 LEFVKSRVDE HRNVVSKVVI TGGCSKLLGI EKVASSILNR QVRVGTPINL KGMWPEYVGK 360
  361 PEMSAAVGSA MLIARTFYKR QCTKNNSHHP GSLEKVLRWI ITKVEA

Type	Start	End	Confidence
Signal Peptide	1	22	0.56
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	406	0.99