YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88607314, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.82
Transmembrane Helix	5	25	0.80
Non-Cytoplasmic	26	36	0.77
Transmembrane Helix	37	59	0.86
Cytoplasmic	60	72	0.78
Transmembrane Helix	73	95	0.94
Non-Cytoplasmic	96	130	0.94
Transmembrane Helix	131	154	0.88
Cytoplasmic	155	171	0.86
Transmembrane Helix	172	195	0.85
Non-Cytoplasmic	196	210	0.77
Transmembrane Helix	211	232	0.87
Cytoplasmic	233	281	0.54
Transmembrane Helix	282	307	0.81
Non-Cytoplasmic	308	318	0.44
Transmembrane Helix	319	344	0.85
Cytoplasmic	345	352	0.37
Transmembrane Helix	353	371	0.66
Non-Cytoplasmic	372	396	0.40

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKFFLIFLA VGFAFLTKYL DIPVLLEAAQ GVSSMFIGLL KLVGIPMIFL SVMSTFSGLS  60
   61 GLKDAKSLIG STIFYALATT TVAALIGLCL YIVIAPAQGI NISEVSDSSS VMDWDYGAHL 120
  121 MSVFPDNFVR IFLDNNVIGC IGVSFLLGAG CLFIEDEQRA FLSKFFSAMF EVFLRAAGFL 180
  181 TYLMPLAVWG FMTVFLCMPQ GQDFSNGLTK YVLCVMLANA IQAVIVLPGL LMAKGIPVIP 240
  241 TLKAVLPSLV TAFFSRSSVV ALPVTIKCVN EGLGESKRVT SFVLPLCASI NMNACASFIL 300
  301 ITVLFVCEVN LHSFSFMEIL IWVIFAIGGA VGNAGVPMGC YFMVMSYLTY MKVPLHVMGL 360
  361 ILPMYSILDM FETALNVWSD ICVTRVIGRK HQAISS