YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88607159, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.65
Transmembrane Helix	5	19	0.70
Cytoplasmic	20	28	0.77
Transmembrane Helix	29	51	0.92
Non-Cytoplasmic	52	71	0.92
Transmembrane Helix	72	94	0.92
Cytoplasmic	95	105	0.82
Transmembrane Helix	106	124	0.95
Non-Cytoplasmic	125	130	0.68
Transmembrane Helix	131	150	0.92
Cytoplasmic	151	159	0.82
Transmembrane Helix	160	181	0.91
Non-Cytoplasmic	182	195	0.87
Transmembrane Helix	196	217	0.89
Cytoplasmic	218	234	0.78
Transmembrane Helix	235	256	0.85
Non-Cytoplasmic	257	272	0.78
Transmembrane Helix	273	291	0.93
Cytoplasmic	292	297	0.88
Transmembrane Helix	298	317	0.92
Non-Cytoplasmic	318	324	0.75
Transmembrane Helix	325	348	0.86
Cytoplasmic	349	367	0.86
Transmembrane Helix	368	389	0.88
Non-Cytoplasmic	390	400	0.75
Transmembrane Helix	401	423	0.91
Cytoplasmic	424	444	0.93
Transmembrane Helix	445	466	0.89
Non-Cytoplasmic	467	491	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPFMILIPV LGGCLIAFLR DSSSKLRGGL FISITFATFI ASIAVLLSFY GNGLPVLRDY  60
   61 TWIGEVFAVD RLSLLMVILS TFLFFLCALC GVFSRACGVD KESESSFFAL LLLLEATVLG 120
  121 VFSVHTSLMF YVFFEASLIP MFFIIGKWGH GDRISAAFRF LIYTGAASLL FLIGLVYSRV 180
  181 FSLGMFESFY ADVSVALALP IGIRIALWIA CFFAFAVKLP MVPCHTWLPK AHVQAPTLGS 240
  241 VLLAGLLIKM GGYGFIRFCL SALPEISWKL SEFVVYLSAI SLVYSSLVAF AQKNMKTLVA 300
  301 YSSVAHMSFV AAGIFSLNES GIVGAIFQML SHGLISAALF LCVGMIYSRT GTMDMSKCGG 360
  361 IAASMPKLSF MMIFFSMASA GLPGTSGFIG EFLSILGIFQ AFRFTAVCFA VGVVLSAAYT 420
  421 LRLCREVIWG SSPEGAKVID SDINAVEFVI LGILAALVLF FGIYPASVIT FLKPWISAIL 480
  481 PELQKFQLSW G