YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88598195, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDEDSIFTN LSGKESPYLA AAKSRGTWFN TKELLALGRD KIIQEIKDSG LRGRGGAGFP  60
   61 TGLKWSFMPK ALPEGSSAYL VVNADESEPG TCKDRDIIRY DPHKILEGIL IAGFAMGVTA 120
  121 AYIYIRGEFY NEYTVLFKAL QEAYADGLLG ENACGSGYNL NVFIHRGAGA YICGEESAQI 180
  181 ESIEGRKGMP RLKPPFPAAV GLYGSPTTVN NVETIAVVGD ILRRGSGWFS SLGIPNNTGT 240
  241 KVFCISGHVN NPCNVEEELG IPMRELIEKY AGGVIGGWDN LLAVIPGGSS VPMLPKHICD 300
  301 DITMDFDSLR AAKSGLGTAG LIVMDKSTDL IEAIERISSF YMHESCGQCS PCREGTGWMW 360
  361 RMMRKMLDGT AEESEIDKLL DVASQIEGHT ICALADAAVW PIQGLFRHFR SVVEERLRSS 420
  421 KARRLA

Type	Start	End	Confidence
Cytoplasmic	1	104	0.63
Transmembrane Helix	105	125	0.60
Non-Cytoplasmic	126	426	0.97