YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88606904, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.76
Transmembrane Helix	11	30	0.94
Cytoplasmic	31	38	0.80
Transmembrane Helix	39	59	0.91
Non-Cytoplasmic	60	81	0.76
Transmembrane Helix	82	103	0.88
Cytoplasmic	104	116	0.81
Transmembrane Helix	117	136	0.93
Non-Cytoplasmic	137	142	0.67
Transmembrane Helix	143	161	0.85
Cytoplasmic	162	170	0.84
Transmembrane Helix	171	194	0.85
Non-Cytoplasmic	195	213	0.79
Transmembrane Helix	214	237	0.86
Cytoplasmic	238	254	0.76
Transmembrane Helix	255	276	0.85
Non-Cytoplasmic	277	295	0.80
Transmembrane Helix	296	314	0.96
Cytoplasmic	315	321	0.86
Transmembrane Helix	322	350	0.73
Non-Cytoplasmic	351	354	0.62
Transmembrane Helix	355	374	0.89
Cytoplasmic	375	386	0.82
Transmembrane Helix	387	409	0.88
Non-Cytoplasmic	410	426	0.88
Transmembrane Helix	427	449	0.90
Cytoplasmic	450	468	0.88
Transmembrane Helix	469	487	0.95
Non-Cytoplasmic	488	500	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVGLLCRSD VLLFVVVSLP FVCSALIMAL KRLSHSQEAL STVASLVLFP TTCALYFALQ  60
   61 GNPAILQYRL SSAILFILEP EALGIVFGIL VSFLWAVTNI YTIGYMNKVY GKLQDRSVFY 120
  121 SCFAASIGCT IGIAFAGNLV TLFIFYEMLT VCTYPLIIHG GSKDSIASGS FYIKTLLCSS 180
  181 VFLFLPAIAI ICGMSDGAGL FSAKSFISET HPSLLPFIVT MLCYGVAKAA IMPVHLWLPR 240
  241 AMVAPTPVSA LLHAVAVVKS GVFTLIKITV CAIGVHGMYN YYNAPVAVDV APHHNIMLYL 300
  301 SVVTIIVGSV FAVTQKNLKR LLAYSTISQL SYITLALSMF TDGAVTAAVF QMVCHAFAKI 360
  361 TLFFAVGAVY AASGKTTIRD IDGLGRVMPI TFTAFCIGAL AMIGIPPAAT FWGKFYIITE 420
  421 ALKQQNYIVI FTVALSTVLN TLYFIPLMYR VFFAADATCA GRVKEEAPPL ILLAMLVSST 480
  481 CTILLFLKPD IVLGMLSVFG