YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VGLU1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.97
Transmembrane Helix	67	88	0.88
Non-Cytoplasmic	89	116	0.91
Transmembrane Helix	117	138	0.87
Cytoplasmic	139	145	0.79
Transmembrane Helix	146	165	0.88
Non-Cytoplasmic	166	172	0.68
Transmembrane Helix	173	194	0.83
Cytoplasmic	195	205	0.89
Transmembrane Helix	206	229	0.88
Non-Cytoplasmic	230	236	0.77
Transmembrane Helix	237	256	0.92
Cytoplasmic	257	300	0.94
Transmembrane Helix	301	323	0.85
Non-Cytoplasmic	324	343	0.83
Transmembrane Helix	344	364	0.88
Cytoplasmic	365	378	0.87
Transmembrane Helix	379	397	0.76
Non-Cytoplasmic	398	402	0.62
Transmembrane Helix	403	425	0.88
Cytoplasmic	426	435	0.64
Transmembrane Helix	436	459	0.88
Non-Cytoplasmic	460	467	0.70
Transmembrane Helix	468	490	0.89
Cytoplasmic	491	560	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFRQEEFRK LAGRALGRLH RLLEKRQEGA ETLELSADGR PVTTHTRDPP VVDCTCFGLP  60
   61 RRYIIAIMSG LGFCISFGIR CNLGVAIVSM VNNSTTHRGG HVVVQKAQFN WDPETVGLIH 120
  121 GSFFWGYIVT QIPGGFICQK FAANRVFGFA IVATSTLNML IPSAARVHYG CVIFVRILQG 180
  181 LVEGVTYPAC HGIWSKWAPP LERSRLATTA FCGSYAGAVV AMPLAGVLVQ YSGWSSVFYV 240
  241 YGSFGIFWYL FWLLVSYESP ALHPSISEEE RKYIEDAIGE SAKLMNPVTK FNTPWRRFFT 300
  301 SMPVYAIIVA NFCRSWTFYL LLISQPAYFE EVFGFEISKV GLVSALPHLV MTIIVPIGGQ 360
  361 IADFLRSRHI MSTTNVRKLM NCGGFGMEAT LLLVVGYSHS KGVAISFLVL AVGFSGFAIS 420
  421 GFNVNHLDIA PRYASILMGI SNGVGTLSGM VCPIIVGAMT KHKTREEWQY VFLIASLVHY 480
  481 GGVIFYGVFA SGEKQPWAEQ EEMSEEKCGF VGHDQLAGSD ESEMEDEAEP PGAPPAPPPS 540
  541 YGATHSTVQP PRPPPPVRDY