YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71282520, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.97
Transmembrane Helix	43	62	0.96
Non-Cytoplasmic	63	81	0.90
Transmembrane Helix	82	104	0.90
Cytoplasmic	105	119	0.93
Transmembrane Helix	120	141	0.93
Non-Cytoplasmic	142	180	0.93
Transmembrane Helix	181	200	0.93
Cytoplasmic	201	220	0.84
Transmembrane Helix	221	242	0.90
Non-Cytoplasmic	243	260	0.87
Transmembrane Helix	261	283	0.87
Cytoplasmic	284	294	0.85
Transmembrane Helix	295	318	0.86
Non-Cytoplasmic	319	349	0.85
Transmembrane Helix	350	369	0.91
Cytoplasmic	370	377	0.87
Transmembrane Helix	378	400	0.90
Non-Cytoplasmic	401	434	0.91
Transmembrane Helix	435	455	0.86
Cytoplasmic	456	475	0.82
Transmembrane Helix	476	494	0.94
Non-Cytoplasmic	495	502	0.79
Transmembrane Helix	503	527	0.91
Cytoplasmic	528	535	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNKEDTDK DKELVVEKSV YRSDHVIGEN NVEIMGMDLH NPVFFFSSTL IVVFVLLTLL  60
   61 FPELAKQSFD ASKSWSIDHF DWLFIVSGNL FVLFCLALVV SPFGKIRLGG TEAKPDFSKL 120
  121 SWFSMLFSAG MGIGLMFWSV AEPVGYFTNW YGTPLNTVAG TPEAAKMAMA ATMYHWGLHP 180
  181 WAIYAVVGLS LAFFTFNCNM PLTIRSSFYP LLGERVWGWP GNVIDITAVL ATIFGLATSL 240
  241 GFGAQQAAGG LSFLFDIPNT INTQIAIIFG VTMVAIFSVT RGLDGGVKLL SNINMSLAVV 300
  301 LMLFVIITGS TLVIINGVGT TLLAYAENII PLSNWIGRED ETFYHGWTVF YWAWWVSWSP 360
  361 FVGMFIARIS RGRTVREFIL AVLFVPTLLT SVWMATFGGM GLEQVQNGVG QLAQGIGDSS 420
  421 LALFQMLENL PLSNVTSFLA IVLVLIFFVT SSDSGSLVID SITAGGKVDV PVPQRIFWAA 480
  481 IEGVIAAALL FGGGKDALGA LQAAAITVGL PFTVLLIVMC FGLFLGLKRE YKKLS