YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71282472, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.91
Transmembrane Helix	30	50	0.85
Non-Cytoplasmic	51	57	0.86
Transmembrane Helix	58	79	0.92
Cytoplasmic	80	87	0.89
Transmembrane Helix	88	110	0.88
Non-Cytoplasmic	111	116	0.83
Transmembrane Helix	117	136	0.92
Cytoplasmic	137	154	0.89
Transmembrane Helix	155	176	0.93
Non-Cytoplasmic	177	181	0.88
Transmembrane Helix	182	203	0.91
Cytoplasmic	204	239	0.94
Transmembrane Helix	240	261	0.85
Non-Cytoplasmic	262	283	0.83
Transmembrane Helix	284	304	0.90
Cytoplasmic	305	316	0.85
Transmembrane Helix	317	337	0.94
Non-Cytoplasmic	338	350	0.79
Transmembrane Helix	351	373	0.84
Cytoplasmic	374	384	0.75
Transmembrane Helix	385	406	0.90
Non-Cytoplasmic	407	416	0.88
Transmembrane Helix	417	439	0.91
Cytoplasmic	440	479	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQPNAGTLF GHPKGLFLLF GTEMWERFGY YGMRALLVLY LIASVQDGGF GWTNQEALRL  60
   61 YGFFTMAVYL TPVIGGWLAD NYIGQRKAII WGGIIFSLGY FTLGIPKSMI VGMEETVFYL 120
  121 GLALIITGNG LFKANVSSLV GELYDDGDHR RDAAFTIFYM GINLGAFLAP ITVGILGEQV 180
  181 NWHYGFILAG CGMLIGLALQ LTLANKYLGD IGVVPSAKRT KGEQKSHAPL TSQDMDRMKV 240
  241 ILIMSMFSVV FWAGFEQAGG LFTIYASDFT DRTLFGFEIA ASSFQSLNAM FIILLAPFVA 300
  301 SVWVKMGSNE PTSPKKFALA MLFLALGFFV MFWATMVQGG DVAVKVSMLF LVFAYLFHTL 360
  361 GELCLSPIGL SLVTKLAPLK FTSLLMGIWF FFTALSNFLA AFIGSFVGEG EEMVNNAANI 420
  421 FMGVGVGALI TGLIIYLSAG KLVEWMHGAE GDIPSNLEEK IEQEISVTGT HEGVAETHN