YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71282288, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNIIKASVF QSIKSKLTNP SNWLCFLSGF FLVFAYAPFS YWWLALTLPS IMLYQVKNSS  60
   61 PRVAAKKTAL FAFGWFSSGI SWVHVSIDQF GGLPLIVSLL LMLALCAYLA LFPALAGYLT 120
  121 ARIAKNKHVN LWLFPSIWLL CEYLRAVVLT GFPWLSLGYS QIDSPLASFA PVIGEVGLTG 180
  181 IILVLNICWV KIYCFCLDYI NNKNQKSSIT LSHKNLLLPL SLMVSIMLTS FSFAHVSWTE 240
  241 LTGKSTKVAL IQGNVAQSIK WQPEQEWPTM LKYLDLTRVN YDADLIVWPE SAIPALEPAV 300
  301 QDYLGTVNSS AILNNSTIIT GLINYNFESK EYFNALVVLG KKNTEDEQGY YYNHSNRYYK 360
  361 SHLLPIGEFV PFQELLRPIA PFFNLPMSSF TAGNYIQPNL IANNLHILPL NCFEIAFPMQ 420
  421 LAANFTDDTD MILTVSNDAW FGDSHGPHQH FEIARMRALE FGRPLVRATN NGVTGMINHL 480
  481 GEVTAIAPQF EEVVLKGTVE FVKGDTPYSQ WPNLILWLMI LLPLTLMKIF KL

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.52
Transmembrane Helix	21	54	0.70
Cytoplasmic	55	67	0.57
Transmembrane Helix	68	85	0.72
Non-Cytoplasmic	86	94	0.72
Transmembrane Helix	95	119	0.86
Cytoplasmic	120	130	0.85
Transmembrane Helix	131	152	0.86
Non-Cytoplasmic	153	171	0.80
Transmembrane Helix	172	195	0.85
Cytoplasmic	196	215	0.91
Transmembrane Helix	216	236	0.94
Non-Cytoplasmic	237	510	0.96
Transmembrane Helix	511	530	0.58
Cytoplasmic	531	532	0.57