YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71147697, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.58
Transmembrane Helix	7	28	0.89
Cytoplasmic	29	48	0.50
Transmembrane Helix	49	70	0.68
Non-Cytoplasmic	71	76	0.46
Transmembrane Helix	77	95	0.88
Cytoplasmic	96	115	0.92
Transmembrane Helix	116	135	0.94
Non-Cytoplasmic	136	151	0.84
Transmembrane Helix	152	172	0.90
Cytoplasmic	173	179	0.80
Transmembrane Helix	180	202	0.88
Non-Cytoplasmic	203	249	0.95
Transmembrane Helix	250	272	0.89
Cytoplasmic	273	283	0.87
Transmembrane Helix	284	305	0.91
Non-Cytoplasmic	306	401	0.97
Transmembrane Helix	402	426	0.91
Cytoplasmic	427	446	0.95
Transmembrane Helix	447	466	0.96
Non-Cytoplasmic	467	472	0.77
Transmembrane Helix	473	495	0.90
Cytoplasmic	496	502	0.81
Transmembrane Helix	503	523	0.92
Non-Cytoplasmic	524	545	0.89
Transmembrane Helix	546	570	0.82
Cytoplasmic	571	596	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDELKLYTYI AVFSTFALYF AIAWWARAGS TSDFYVAGGG ITPMQNGMAI GADWMSAASF  60
   61 ISMAGLIAFL GYGGSVFLMG WTGGYVLLAM LLAPYMRKHG KFTVPEFIFD RYYSKTARIV 120
  121 AVACLIIASL TYIIGQMKGV GVAFSRFLEV DYGLGLGIGM FVVWVYAVLG GMKGITYTQI 180
  181 AQYVVMIFAY TIPAIFISLQ LTGNPIPQLG LGSTLADGSG VYLLDKLDMV VTDLGFKEYT 240
  241 TSNLGGTLNM FAYTISLMIG TAGLPHVIMR FFTVPSVQAA RQSAGYALVF IGLLYTVAPA 300
  301 VGAMARLNLM NTIEPTAGQN LVYDERPQWF KDWEKTGLLK FEDKNGDGKI QYTSNATDQT 360
  361 VTKINTMTGK EIVVVPNEMV KVDRDIMVLA NPAIANLPNW VIALVAAGGL AAALSTAAGL 420
  421 LLAISSSISH DLMKGVLTPD LSEKNELLAG RVVMTIAILV SGYLGLHPPG FAAGTVALAF 480
  481 GLAASSIFPA LMMGIFSKKM SGTAAISGMV AGIGVTMMYV FQHKGIMFIP GTSFLGDMGK 540
  541 DWFFGISPNA FGAVGAIVNF GVAFIVLQFT GPCPANIVAM VENMRAPGDC AAAHDH