YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71147570, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILPRSAFG QTVLLIGFLL FINQIVSYIS FALYVIEPNQ QQMNQLLAKQ VRVVFIDIND  60
   61 AKLSPKMAKA FHNETGIGVY REEDAYKFGL ANAGLYPYRS EQMSALLGGP AEVRISQGDE 120
  121 YLFWIRAPQA PHLWVKIPLI GMEKGSFSPL IFFMVVIGLL SVMGGWVFVR QLNRPLKSLE 180
  181 IAAEDVGRGD FPDPLIERGT SEVMAVTQAF NHMSKGIKQL EEDRNLLMAG ISHDLRTPLT 240
  241 RIRLASEMMN ESDDFLKEGI ETDIDDMNNI IDQFIDYIRH DSKDKAELGD LNLLVDEVLN 300
  301 VETPIDRVIT FHPGECAKIP LRHVAVRRAL ANLVQNAIRY TTDEIEVFTG VEKDYAFFIV 360
  361 SDNGAGIPDA DIERLFQPFT QGDTARGTEG SGLGLAIIKR IVDTHGGKVK LSNKPSGGLQ 420
  421 AKVYLPLVFK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.62
Transmembrane Helix	12	36	0.82
Non-Cytoplasmic	37	146	0.69
Transmembrane Helix	147	169	0.90
Cytoplasmic	170	430	0.66