YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|71281796, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLISSNRS RGVKNSLAKW LITLGGISVL FTLVLIFLYL LYVVKPIFDS AKIEPKVSIS  60
   61 LDLTSNEKVL STGVDELQEV AYEITEAGNI DFYYLKASAS ESDNQFAVGD NALSMSLFSS 120
  121 EDFNQEQVVN VVNSFSANKL LHTIKGKTLL IQPSFYAKYA NDTREIIPQV NYPLGQNSLV 180
  181 IDEQQTPLSQ LAFAMDDERI VFVAFTEDKR LIKTSFIAED DFSSSSDGDD VEYETIFQQI 240
  241 ELTDDVIDEI KVTPDLSLAF IRSASTVYVY SLNDDEEVSL KATITPTLDN SNTYLTSMAL 300
  301 LSGSSSVLLG DSSGRISQWF EVATESGRQF KQIRSFNAND GEASYDKNNK TSSAITAIYT 360
  361 EQYRKSFYTM TNSGMVNVFY TTSSAHLWQG KLASTQPEAF SIAPRANGLI IIGNDPLDAS 420
  421 NKSLQAFSVH NEHPEVTWQA LWQEVWYEGY PEPDYIWQST SGSDDFEGKF SLVPISFGTI 480
  481 KAALYAMLFA VPIALTAAIY TAYFMTPGMR KKVKPTIEMM EALPTVILGF LAGLWLAPLM 540
  541 EEYLPAIFLL FIFLPLATLI TAFSWHKLPN QLKDKLPETL APILLIPVII LATYAAFSLS 600
  601 PLLENSFFNG DMRQYLTNDL GINFDQRNAL VVGIAMGFAV IPTIFSMAED AIFSVPGHLT 660
  661 SGSLALGATQ WQTLIGVVLL TASPGIFSAV MMGLGRAVGE TMIVLMATGN TPILDWSIFQ 720
  721 GMRTLAANIA VEMPESEVGS SHYRILFLAA FVLFIFTFIF NTAAEFVRQR LREKYSSM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle