YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71147488, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.79
Transmembrane Helix	16	34	0.88
Non-Cytoplasmic	35	45	0.89
Transmembrane Helix	46	69	0.90
Cytoplasmic	70	77	0.85
Transmembrane Helix	78	102	0.85
Non-Cytoplasmic	103	133	0.95
Transmembrane Helix	134	154	0.93
Cytoplasmic	155	160	0.88
Transmembrane Helix	161	182	0.91
Non-Cytoplasmic	183	194	0.88
Transmembrane Helix	195	217	0.90
Cytoplasmic	218	227	0.88
Transmembrane Helix	228	249	0.88
Non-Cytoplasmic	250	260	0.78
Transmembrane Helix	261	282	0.89
Cytoplasmic	283	289	0.84
Transmembrane Helix	290	309	0.93
Non-Cytoplasmic	310	315	0.70
Transmembrane Helix	316	336	0.92
Cytoplasmic	337	347	0.94
Transmembrane Helix	348	374	0.82
Non-Cytoplasmic	375	389	0.85
Transmembrane Helix	390	412	0.89
Cytoplasmic	413	445	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVIELFTME TTMSKALILC LTLLSFFISG TAWAEEGQLN GANTSWILTS TALVLLMTLP  60
   61 GVALFYGGLV RKKNVLSILM QCFAIGSISS ILWLLVGYSL AFGEGNAFIG DFSKVMMHGI 120
  121 PKDALSGDIP ESLFMLFQMT FAIITPVLII GGFAERMKFS AVLLFSGIWL LAVYAPITHW 180
  181 VWGGGWLAQM GIYDFAGGIV VHITAGTAAL VAALVIGPRR GFPKTPMLPH NLTMTVTGAG 240
  241 MLWVGWFGFN GGSALAANGD ASMAMLVTHI SAAAGTLTWA AIEWKKFGKA SVLGAVTGMV 300
  301 AGLGTITPAS GFVGPGGALI IGISAGFVCF YSTVYIKQKL KIDDSLDVFP VHGVGGILGT 360
  361 LLVGVFSATS LGVFSGFGFA EGIATMAEQI GVQLIGIFST LIYTAVVTYI ILKLVGLMTD 420
  421 GLRVGEEQES NGLDQAEHEE VGYHL