YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71147318, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.97
Transmembrane Helix	11	33	0.93
Non-Cytoplasmic	34	39	0.83
Transmembrane Helix	40	63	0.88
Cytoplasmic	64	82	0.86
Transmembrane Helix	83	101	0.91
Non-Cytoplasmic	102	120	0.61
Transmembrane Helix	121	135	0.76
Cytoplasmic	136	136	0.28
Transmembrane Helix	137	156	0.74
Non-Cytoplasmic	157	162	0.38
Transmembrane Helix	163	183	0.74
Cytoplasmic	184	203	0.59
Transmembrane Helix	204	225	0.89
Non-Cytoplasmic	226	238	0.49
Transmembrane Helix	239	254	0.78
Cytoplasmic	255	255	0.17
Transmembrane Helix	256	273	0.82
Non-Cytoplasmic	274	289	0.43
Transmembrane Helix	290	306	0.59
Cytoplasmic	307	337	0.76
Transmembrane Helix	338	355	0.88
Non-Cytoplasmic	356	416	0.73
Transmembrane Helix	417	439	0.82
Cytoplasmic	440	443	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEKNAPQEN LFALLPFAIF LGLFLGTGII LTLQGVDFAF YQLPASIAII PAIIVSIGLG  60
   61 KYLSKSTIEK QVEQFIRGAG NSNITTMCII YLLAGAFSVV AKATGSVDAS VQLGLAVFPD 120
  121 YLLLPGLFLV AAFLSTAMGT SMGTIAAIAP VALGFIETAN LDAALVAGCL ISGAIFGDNL 180
  181 SIISDTTIAS TRSQGAQMKD KFRVNFKFAV PAALICLVIF TILGGEVSHE LSNESALIGL 240
  241 IPYVTILVLA LMGVNVFVVL TLGIVLAAAI GMISNGYQLS AWLKDITAGF SSMQDIFLLS 300
  301 LFIGGLSELV RQQGGLAALT RVIETLARKL TPNNKRRAAG LGIAGLAFIC NFFTANNTVS 360
  361 IIVTGDTAKN LATDGELSPA ESASLLDVFA CINQGMLPYG AQVLLLGATL HISPLSVASH 420
  421 SFYPMVLFFA AGFSFWRLTS NTK