YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71147112, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.65
Transmembrane Helix	7	28	0.88
Cytoplasmic	29	42	0.55
Transmembrane Helix	43	61	0.93
Non-Cytoplasmic	62	73	0.54
Transmembrane Helix	74	93	0.91
Cytoplasmic	94	99	0.59
Transmembrane Helix	100	124	0.84
Non-Cytoplasmic	125	162	0.72
Transmembrane Helix	163	185	0.89
Cytoplasmic	186	225	0.94
Transmembrane Helix	226	242	0.96
Non-Cytoplasmic	243	248	0.81
Transmembrane Helix	249	268	0.94
Cytoplasmic	269	279	0.82
Transmembrane Helix	280	300	0.92
Non-Cytoplasmic	301	307	0.75
Transmembrane Helix	308	332	0.87
Cytoplasmic	333	338	0.91
Transmembrane Helix	339	361	0.85
Non-Cytoplasmic	362	376	0.85
Transmembrane Helix	377	400	0.87
Cytoplasmic	401	407	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLAMEINIS ILETLVVALI ILFSGYYCNS KVSFLRNNNI PEPVVGGIIF SILAAIAHSI  60
   61 FDIHFNFDMS FKNPLMTVFF TTVGLGASYS LLLKGGPKVV LFLGVATVYL LVQNAIGVSI 120
  121 AIGTGMNPLM GLIGGSVTLS GGHGNGATYA DLFITEYNMP ANIFELAMAA ATMGLVLGGL 180
  181 VGGPVSKRLI TRYNLKADEY HEELDDTITF NPEDHDLVTP KKMMETLFII LLCMTVGHIV 240
  241 YLNLKAADIV LPAFLMPLLF GVVATNLCEV SKRYTISRAC IDLWGTMALS IFLALALMSL 300
  301 KVWQLASLAG PMVVIILIQT VMLMMFAYFV TFRIMGKNYN AAIIAGGHCG FGLGATPTAV 360
  361 ANMESLVARH GPSPQAFLVV PLVGAFFIDI TNALVIQLYL SLPFVSP