YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146944, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.60
Transmembrane Helix	14	38	0.85
Cytoplasmic	39	70	0.58
Transmembrane Helix	71	94	0.74
Non-Cytoplasmic	95	97	0.50
Transmembrane Helix	98	116	0.73
Cytoplasmic	117	148	0.90
Transmembrane Helix	149	168	0.95
Non-Cytoplasmic	169	185	0.87
Transmembrane Helix	186	207	0.91
Cytoplasmic	208	216	0.87
Transmembrane Helix	217	238	0.89
Non-Cytoplasmic	239	254	0.72
Transmembrane Helix	255	275	0.79
Cytoplasmic	276	304	0.86
Transmembrane Helix	305	328	0.87
Non-Cytoplasmic	329	354	0.86
Transmembrane Helix	355	375	0.94
Cytoplasmic	376	391	0.91
Transmembrane Helix	392	413	0.91
Non-Cytoplasmic	414	420	0.75
Transmembrane Helix	421	441	0.91
Cytoplasmic	442	460	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFLTGLISS LNSLVWGVPM LVMILGVGLF LMVGLRFMPI LKLGTGFRLL WTGRIPDEDK  60
   61 SAKGEISPFN ALMTSLSATI GTGNIAGVAT AIFLGGPGAL FWMWCTALVG MATKFAEAVL 120
  121 AVRYREVDAN GNHIGGPMYY IKNGLSSRWG WLGGAFALFG SIAAFGIGNT VQSNSVANAL 180
  181 ESSFGVPPVA TGIILMVLVG LVLMGGIKRI GDVAGKLVPL MAIFYISCGI VVLMVHAAEL 240
  241 PAAIALIFES AFTETAAEGG FAGAAVWAAI RFGVARGVFS NEAGLGSAPI AHAAAKTNNP 300
  301 VAQGLVGMLG TFIDTLVVCS ITGLAIVVSG EWTSGSTGAE LTSNAFATAI PYGNYIVAIA 360
  361 LTVFAFTTIL GWSVYGEKCV QYFFGVKAIM PFRILWILVV PVGAIGSLEF IWLLADTMNA 420
  421 LMAIPNLIAL VLLSPIVIKL TREYFVSGGK APAEMTKQAD