YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146739, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEVFNFCAG PAMLPTPVMA KAQHEFLNWQ GTGSSVMELS HRSGIYIAMA EKAEADLREL  60
   61 MSIPDNYKVL FCHGGGRGQF SAVPLNLLPT GQTADYIVDG SWSKAAAAEA KNFGDINVIN 120
  121 ITKEDNGNIS VLNPTEWPIS PNAAYVHYCP NETVNGIEIN EIPETNGVPL VADMSSTILS 180
  181 HEVDVSKFGL IYAGAQKNIG PSGLTIVIVR EDLLGHAQIA TPCIMNYKLA ADNDSMYNTP 240
  241 PTYAWYLAGL VFQWLKDLGG VKAIAKINQT KAALLYQAID DSDFYQNTID TKYRSKMNIP 300
  301 FWLKDESLND KFLSESEAAG LTALKGHRIV GGMRASIYNA MPIEGVQALV DFMQQFEKRN 360
  361 R

Type	Start	End	Confidence
Signal Peptide	1	20	0.87
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	361	0.99