YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71280993, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.84
Transmembrane Helix	12	31	0.95
Non-Cytoplasmic	32	40	0.81
Transmembrane Helix	41	60	0.89
Cytoplasmic	61	88	0.84
Transmembrane Helix	89	112	0.92
Non-Cytoplasmic	113	138	0.92
Transmembrane Helix	139	159	0.91
Cytoplasmic	160	173	0.84
Transmembrane Helix	174	192	0.95
Non-Cytoplasmic	193	218	0.88
Transmembrane Helix	219	241	0.89
Cytoplasmic	242	253	0.80
Transmembrane Helix	254	275	0.89
Non-Cytoplasmic	276	310	0.85
Transmembrane Helix	311	332	0.86
Cytoplasmic	333	352	0.89
Transmembrane Helix	353	375	0.90
Non-Cytoplasmic	376	384	0.82
Transmembrane Helix	385	404	0.93
Cytoplasmic	405	426	0.88
Transmembrane Helix	427	446	0.78
Non-Cytoplasmic	447	448	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVSRGGFSS RFGFIMAAAG SAVGLGNIWG FPTQTASNGG AAFVLVYLVL AFSLAYPAFM  60
   61 AELLIGRYGQ ANAVSSMQKI ARNTWQKRFG FVVGFGGIIC AALILSFYSI IAGWMMSYAI 120
  121 EPLARLGGFT GAADWLINHS LIRNILFTAL FMGLTIFIIR RGVEEGIEKW SKRLMPMLIG 180
  181 LLILLIIYVF TLDGAREGFN AYLNPDISRV FEPDLLISAL GQAFFSLSLG TSVMIIYGSY 240
  241 IAKKENLVTL GAQVTLIDVS IAFLAGLLII PAMYVAQAQG VAIFAEDGSL ISGSNLVFTV 300
  301 LPALFTGMGD VGLFVAFGFF VLMSIAALTS SISMLEGPVS YVVERHDTPR EKATTFIGLG 360
  361 ILVLSILIVI NLEWMLDFVA TLSTQYGQPI IAMLCCVFAG WIWHRSDILS EIKQGNEHVE 420
  421 HSLFWKIWPW YTKFVCPTAI GLVFWHSL