YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71280793, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.75
Transmembrane Helix	10	31	0.78
Non-Cytoplasmic	32	35	0.65
Transmembrane Helix	36	55	0.84
Cytoplasmic	56	76	0.85
Transmembrane Helix	77	96	0.95
Non-Cytoplasmic	97	107	0.82
Transmembrane Helix	108	133	0.81
Cytoplasmic	134	145	0.85
Transmembrane Helix	146	166	0.91
Non-Cytoplasmic	167	177	0.83
Transmembrane Helix	178	199	0.91
Cytoplasmic	200	228	0.94
Transmembrane Helix	229	248	0.91
Non-Cytoplasmic	249	260	0.78
Transmembrane Helix	261	283	0.90
Cytoplasmic	284	291	0.85
Transmembrane Helix	292	310	0.92
Non-Cytoplasmic	311	315	0.67
Transmembrane Helix	316	338	0.83
Cytoplasmic	339	357	0.80
Transmembrane Helix	358	381	0.90
Non-Cytoplasmic	382	399	0.80
Transmembrane Helix	400	420	0.93
Cytoplasmic	421	442	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISVREKIAY GLGDTASNII FQTVMMFLLL FYTDVVGLSP AVVGTMFLFV RLIDAVTDPI  60
   61 MGNLADKTRT KWGQFRPYLL WLALPFALIS ILAFTTPDLT GNNKVIYAFV TYTLLMIAYT 120
  121 AINIPYCGLG GVITADAKER VTVQSYRFVF GMLGGVIVAG ATMPMVEWFG QGDTAKGYQY 180
  181 TMVAMSSLGV VLFLLCFLGT KERVKPPENQ DSSMKENLQS LWKNDQWRIL CIASFYLLTG 240
  241 QVLRLTLAVY YVKYFLGRED LITSFLTLGV VASMIGCAVA QPLAKRVCKI KAYIALQSLS 300
  301 AVICLASFLI SPNQIILAFV AFISWKFFLD MASPLLWAKM ADTIDYGHKK TGIRVTGLVY 360
  361 SGVIFFIKMG IAIGGALAGW LLTFYGYQAD LEQSEATKQG LLLSFTVLPA LGSFAVAWVM 420
  421 RKYTLTEQRV VQIQVELSTE TK