YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146508, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.93
Transmembrane Helix	14	34	0.93
Cytoplasmic	35	50	0.78
Transmembrane Helix	51	71	0.90
Non-Cytoplasmic	72	115	0.92
Transmembrane Helix	116	134	0.94
Cytoplasmic	135	139	0.87
Transmembrane Helix	140	161	0.88
Non-Cytoplasmic	162	181	0.93
Transmembrane Helix	182	205	0.88
Cytoplasmic	206	218	0.87
Transmembrane Helix	219	239	0.90
Non-Cytoplasmic	240	257	0.89
Transmembrane Helix	258	280	0.89
Cytoplasmic	281	288	0.78
Transmembrane Helix	289	306	0.94
Non-Cytoplasmic	307	312	0.77
Transmembrane Helix	313	333	0.93
Cytoplasmic	334	341	0.88
Transmembrane Helix	342	362	0.93
Non-Cytoplasmic	363	371	0.77
Transmembrane Helix	372	393	0.94
Cytoplasmic	394	426	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQNIFQLQY ALDTFYFLIC GALVMWMAAG FSMLEAGLVR AKNTTEILTK NVALYAIACI  60
   61 MYLVVGYDIM YGGGVFLNGI ALDGASDAEA LVGAVLAESA EAGFDGGAVY SNASDFFFQV 120
  121 VFVATAMSIV SGAVAERMKL WAFLAFTVVL TGFIYPMEGS WTWNGDAVFG LYTLGDLGFS 180
  181 DFAGSGIVHM AGASAALAGV LLLGARKGKY SKDGKVNAIP GANLPMATLG TFILWMGWFG 240
  241 FNGGSVLKLA DINSANSVAM VFLNTNAAAA AGAISALIFA KILFKKADLT MTLNGALAGL 300
  301 VAITAEPSTP SPLQATIFGA IAGVIVVMSI LALDKVKIDD PVGAISVHGV VGFFGLMIVP 360
  361 ITNSSSSFSG QLIGAATIFV WVFVTSFIVW FALKKVIGIR VSAEEEYEGV DISDCGMEAY 420
  421 PEFTRG